Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 RNU6-1321P-201ENST00000390905 107 ntBASIC0.29□□□□□ -2.36
SNX3O60493 SNRPGP12-201ENST00000449481 213 ntBASIC0.29□□□□□ -2.36
SNX3O60493 SCARNA16.5-201ENST00000517114 183 ntBASIC0.29□□□□□ -2.36
SNX3O60493 RNU6-1223P-201ENST00000517124 104 ntBASIC0.29□□□□□ -2.36
SNX3O60493 RNA5SP47-201ENST00000517230 109 ntBASIC0.29□□□□□ -2.36
SNX3O60493 MIR3121-201ENST00000579680 77 ntBASIC0.29□□□□□ -2.36
SNX3O60493 MIR6513-201ENST00000621188 64 ntBASIC0.29□□□□□ -2.36
SNX3O60493 Y_RNA.8-201ENST00000362353 102 ntBASIC0.28□□□□□ -2.36
SNX3O60493 RNY1P2-201ENST00000364820 117 ntBASIC0.28□□□□□ -2.36
SNX3O60493 MIR206-201ENST00000384872 86 ntBASIC0.28□□□□□ -2.36
SNX3O60493 MIR513C-201ENST00000401352 84 ntBASIC0.28□□□□□ -2.36
SNX3O60493 RNA5SP134-201ENST00000516492 96 ntBASIC0.28□□□□□ -2.36
SNX3O60493 MIR4639-201ENST00000584938 69 ntBASIC0.28□□□□□ -2.36
SNX3O60493 MIR7107-201ENST00000611489 80 ntBASIC0.28□□□□□ -2.36
SNX3O60493 MIR6828-201ENST00000636181 60 ntBASIC0.28□□□□□ -2.36
SNX3O60493 Y_RNA.150-201ENST00000363562 102 ntBASIC0.27□□□□□ -2.37
SNX3O60493 RNU6-1327P-201ENST00000365302 105 ntBASIC0.27□□□□□ -2.37
SNX3O60493 PCNPP3-201ENST00000393579 471 ntBASIC0.27□□□□□ -2.37
SNX3O60493 AC108740.1-201ENST00000498629 225 ntBASIC0.27□□□□□ -2.37
SNX3O60493 MIR3144-201ENST00000579460 79 ntBASIC0.27□□□□□ -2.37
SNX3O60493 AC243829.6-201ENST00000612652 106 ntBASIC0.27□□□□□ -2.37
SNX3O60493 FTX_2.1-201ENST00000618816 94 ntBASIC0.27□□□□□ -2.37
SNX3O60493 AC244669.1-204ENST00000621564 178 ntBASIC0.27□□□□□ -2.37
SNX3O60493 AC243829.3-201ENST00000622177 108 ntBASIC0.27□□□□□ -2.37
SNX3O60493 Y_RNA.56-201ENST00000362798 112 ntBASIC0.26□□□□□ -2.37
SNX3O60493 Y_RNA.398-201ENST00000383952 99 ntBASIC0.26□□□□□ -2.37
SNX3O60493 Y_RNA.448-201ENST00000384185 108 ntBASIC0.26□□□□□ -2.37
SNX3O60493 RNU6-429P-201ENST00000384582 108 ntBASIC0.26□□□□□ -2.37
SNX3O60493 SNORD77B-201ENST00000391112 67 ntBASIC0.26□□□□□ -2.37
SNX3O60493 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.26□□□□□ -2.37
SNX3O60493 RNA5SP247-201ENST00000411181 105 ntBASIC0.26□□□□□ -2.37
SNX3O60493 RNA5SP227-201ENST00000516184 113 ntBASIC0.26□□□□□ -2.37
SNX3O60493 Y_RNA.692-201ENST00000516627 105 ntBASIC0.26□□□□□ -2.37
SNX3O60493 IGKV1-22-201ENST00000524313 326 ntBASIC0.26□□□□□ -2.37
SNX3O60493 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.26□□□□□ -2.37
SNX3O60493 AL078603.1-201ENST00000603824 313 ntBASIC0.26□□□□□ -2.37
SNX3O60493 AC090425.1-201ENST00000610007 140 ntBASIC0.26□□□□□ -2.37
SNX3O60493 RNA5SP62-201ENST00000363457 110 ntBASIC0.25□□□□□ -2.37
SNX3O60493 Y_RNA.270-201ENST00000364693 104 ntBASIC0.25□□□□□ -2.37
SNX3O60493 RNU6-886P-201ENST00000384319 105 ntBASIC0.25□□□□□ -2.37
SNX3O60493 RNU6-1307P-201ENST00000391012 103 ntBASIC0.25□□□□□ -2.37
SNX3O60493 RNU2-59P-201ENST00000410482 191 ntBASIC0.25□□□□□ -2.37
SNX3O60493 AC069271.1-201ENST00000445577 156 ntBASIC0.25□□□□□ -2.37
SNX3O60493 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
SNX3O60493 AC091304.10-201ENST00000641554 121 ntBASIC0.25□□□□□ -2.37
SNX3O60493 Y_RNA.224-201ENST00000364308 111 ntBASIC0.24□□□□□ -2.37
SNX3O60493 RNU6-616P-201ENST00000384353 107 ntBASIC0.24□□□□□ -2.37
SNX3O60493 RNU7-48P-201ENST00000458875 63 ntBASIC0.24□□□□□ -2.37
SNX3O60493 MIR4711-201ENST00000578274 70 ntBASIC0.24□□□□□ -2.37
SNX3O60493 MIR548X2-201ENST00000579776 100 ntBASIC0.24□□□□□ -2.37
SNX3O60493 TUG1_4.1-201ENST00000619464 181 ntBASIC0.24□□□□□ -2.37
SNX3O60493 Y_RNA.114-201ENST00000363265 113 ntBASIC0.23□□□□□ -2.37
SNX3O60493 VTRNA1-3-201ENST00000365645 89 ntBASIC0.23□□□□□ -2.37
SNX3O60493 RNU6-863P-201ENST00000515989 104 ntBASIC0.23□□□□□ -2.37
SNX3O60493 RNU7-2P-201ENST00000516096 62 ntBASIC0.23□□□□□ -2.37
SNX3O60493 RNA5SP220-201ENST00000516298 104 ntBASIC0.23□□□□□ -2.37
SNX3O60493 AP001328.1-201ENST00000528550 176 ntBASIC0.23□□□□□ -2.37
SNX3O60493 MIR4500-201ENST00000579472 76 ntBASIC0.23□□□□□ -2.37
SNX3O60493 AP001340.1-201ENST00000624405 217 ntBASIC0.23□□□□□ -2.37
SNX3O60493 Y_RNA.49-201ENST00000362714 112 ntBASIC0.22□□□□□ -2.37
SNX3O60493 Y_RNA.98-201ENST00000363109 102 ntBASIC0.22□□□□□ -2.37
SNX3O60493 Y_RNA.294-201ENST00000364916 102 ntBASIC0.22□□□□□ -2.37
SNX3O60493 Y_RNA.400-201ENST00000383963 111 ntBASIC0.22□□□□□ -2.37
SNX3O60493 Y_RNA.420-201ENST00000384043 110 ntBASIC0.22□□□□□ -2.37
SNX3O60493 RNU6-815P-201ENST00000384080 113 ntBASIC0.22□□□□□ -2.37
SNX3O60493 MT-TI-201ENST00000387365 69 ntBASIC0.22□□□□□ -2.37
SNX3O60493 MIR936-201ENST00000401264 98 ntBASIC0.22□□□□□ -2.37
SNX3O60493 RNA5SP193-201ENST00000410353 107 ntBASIC0.22□□□□□ -2.37
SNX3O60493 AC073261.1-201ENST00000429409 121 ntBASIC0.22□□□□□ -2.37
SNX3O60493 AC244505.6-201ENST00000452829 130 ntBASIC0.22□□□□□ -2.37
SNX3O60493 MTND5P41-201ENST00000517498 206 ntBASIC0.22□□□□□ -2.37
SNX3O60493 AC138869.1-201ENST00000568623 124 ntBASIC0.22□□□□□ -2.37
SNX3O60493 MIR548H5-201ENST00000580314 60 ntBASIC0.22□□□□□ -2.37
SNX3O60493 SNORD115-24-201ENST00000363528 82 ntBASIC0.21□□□□□ -2.38
SNX3O60493 Y_RNA.215-201ENST00000364204 112 ntBASIC0.21□□□□□ -2.38
SNX3O60493 RNU7-6P-201ENST00000516845 62 ntBASIC0.21□□□□□ -2.38
SNX3O60493 AC087741.2-201ENST00000619415 172 ntBASIC0.21□□□□□ -2.38
SNX3O60493 MIR6755-201ENST00000619993 66 ntBASIC0.21□□□□□ -2.38
SNX3O60493 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.21□□□□□ -2.38
SNX3O60493 RNU6-1099P-201ENST00000363533 107 ntBASIC0.2□□□□□ -2.38
SNX3O60493 SNORD115-35-201ENST00000365122 82 ntBASIC0.2□□□□□ -2.38
SNX3O60493 Y_RNA.328-201ENST00000365208 113 ntBASIC0.2□□□□□ -2.38
SNX3O60493 RNU6-716P-201ENST00000365621 103 ntBASIC0.2□□□□□ -2.38
SNX3O60493 RNU6-187P-201ENST00000384139 106 ntBASIC0.2□□□□□ -2.38
SNX3O60493 MIR569-201ENST00000385228 96 ntBASIC0.2□□□□□ -2.38
SNX3O60493 RN7SKP19-201ENST00000516016 252 ntBASIC0.2□□□□□ -2.38
SNX3O60493 AP001362.1-201ENST00000625165 124 ntBASIC0.2□□□□□ -2.38
SNX3O60493 AC021753.1-201ENST00000635724 168 ntBASIC0.2□□□□□ -2.38
SNX3O60493 Y_RNA.127-201ENST00000363386 109 ntBASIC0.19□□□□□ -2.38
SNX3O60493 RNU6-865P-201ENST00000364772 107 ntBASIC0.19□□□□□ -2.38
SNX3O60493 RNU6-1126P-201ENST00000384002 107 ntBASIC0.19□□□□□ -2.38
SNX3O60493 Y_RNA.423-201ENST00000384057 113 ntBASIC0.19□□□□□ -2.38
SNX3O60493 AC069113.3-201ENST00000521019 150 ntBASIC0.19□□□□□ -2.38
SNX3O60493 MIR376B-201ENST00000614515 100 ntBASIC0.19□□□□□ -2.38
SNX3O60493 RNU6-647P-201ENST00000364243 107 ntBASIC0.18□□□□□ -2.38
SNX3O60493 Y_RNA.280-201ENST00000364765 112 ntBASIC0.18□□□□□ -2.38
SNX3O60493 MIR635-201ENST00000384830 98 ntBASIC0.18□□□□□ -2.38
SNX3O60493 BX276092.1-201ENST00000427368 251 ntBASIC0.18□□□□□ -2.38
SNX3O60493 AC108059.2-201ENST00000434626 151 ntBASIC0.18□□□□□ -2.38
SNX3O60493 TRAJ51-201ENST00000504127 63 ntBASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 284.4 ms