Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.64□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 U6.109-201ENST00000636749 87 ntBASIC1.64□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.558-201ENST00000384685 113 ntBASIC1.63□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 MIR517C-201ENST00000385103 95 ntBASIC1.63□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 RNU6-972P-201ENST00000391208 107 ntBASIC1.63□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 RNU4-62P-201ENST00000410125 130 ntBASIC1.63□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 RNU6-887P-201ENST00000410660 100 ntBASIC1.63□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 MIR18B-201ENST00000454574 71 ntBASIC1.63□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 snoU13.21-201ENST00000459368 105 ntBASIC1.63□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 MTND5P40-201ENST00000559945 246 ntBASIC1.63□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.63□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 HSBP1P2-201ENST00000299671 229 ntBASIC1.62□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 RNA5SP133-201ENST00000363368 119 ntBASIC1.62□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 SNORD73B-201ENST00000364394 72 ntBASIC1.62□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.567-201ENST00000384736 106 ntBASIC1.62□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 AC108667.1-201ENST00000428618 249 ntBASIC1.62□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.62□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 AC090897.1-201ENST00000580909 226 ntBASIC1.62□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 AC012676.2-201ENST00000619258 186 ntBASIC1.62□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 RNU6-1244P-201ENST00000363614 108 ntBASIC1.61□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.173-201ENST00000363776 113 ntBASIC1.61□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 AC026421.1-201ENST00000519101 163 ntBASIC1.61□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.119-201ENST00000363301 96 ntBASIC1.6□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.190-201ENST00000363964 101 ntBASIC1.6□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 SNORD113.3-201ENST00000364630 78 ntBASIC1.6□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 RNA5SP61-201ENST00000516453 100 ntBASIC1.6□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 RNU6-762P-201ENST00000517107 102 ntBASIC1.6□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 SNORA31.24-201ENST00000517232 57 ntBASIC1.6□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 AC036111.3-201ENST00000526389 112 ntBASIC1.6□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 MIR4500-201ENST00000579472 76 ntBASIC1.6□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 AC103810.7-201ENST00000607821 91 ntBASIC1.6□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.6□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 SNORA67.5-201ENST00000391036 107 ntBASIC1.59□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 SNORD93-201ENST00000408813 74 ntBASIC1.59□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 RNU1-98P-201ENST00000458992 160 ntBASIC1.59□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 SNORA72.7-201ENST00000516349 94 ntBASIC1.59□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 MIR4491-201ENST00000581087 68 ntBASIC1.59□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 AC008163.1-202ENST00000636004 2889 ntBASIC1.59□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.59□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 SNORD58A-201ENST00000383875 65 ntBASIC1.58□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6-910P-201ENST00000390844 107 ntBASIC1.58□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.588-201ENST00000391254 102 ntBASIC1.58□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 MIR1302-4-201ENST00000408701 150 ntBASIC1.58□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 SNORD83.1-201ENST00000411362 77 ntBASIC1.58□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 AL591704.2-201ENST00000421658 181 ntBASIC1.58□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 MIR4285-201ENST00000581001 85 ntBASIC1.58□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 MIR4769-201ENST00000584126 77 ntBASIC1.58□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.58□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.57□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU1-36P-201ENST00000365130 165 ntBASIC1.57□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6-1134P-201ENST00000365156 101 ntBASIC1.57□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6-997P-201ENST00000384725 107 ntBASIC1.57□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.57□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU7-185P-201ENST00000459215 60 ntBASIC1.57□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU7-21P-201ENST00000459430 62 ntBASIC1.57□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.57□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 AC023934.1-201ENST00000574529 2389 ntBASIC1.56□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 SNORD116-10-201ENST00000363791 102 ntBASIC1.56□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 SNORA80D-201ENST00000384488 135 ntBASIC1.56□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.56□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 SNRPGP12-201ENST00000449481 213 ntBASIC1.56□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 AC023827.1-201ENST00000569247 97 ntBASIC1.56□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 AC020891.4-201ENST00000605745 93 ntBASIC1.56□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6-934P-201ENST00000365154 107 ntBASIC1.55□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.55□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 BX276092.1-201ENST00000427368 251 ntBASIC1.55□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 AC015818.7-201ENST00000428754 109 ntBASIC1.55□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 AC087499.7-201ENST00000441958 109 ntBASIC1.55□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 SNORD79.1-201ENST00000516069 84 ntBASIC1.55□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 SNORA25.16-201ENST00000516741 121 ntBASIC1.55□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 AC106800.4-201ENST00000614905 153 ntBASIC1.55□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.55□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6-403P-201ENST00000363163 104 ntBASIC1.54□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 SNORA72.6-201ENST00000384520 129 ntBASIC1.54□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 SNORD111-201ENST00000408139 94 ntBASIC1.54□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 MIR1257-201ENST00000408490 117 ntBASIC1.54□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU7-95P-201ENST00000459222 64 ntBASIC1.54□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6-531P-201ENST00000516694 104 ntBASIC1.54□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 MIR3124-201ENST00000582636 67 ntBASIC1.54□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.17-201ENST00000362433 111 ntBASIC1.53□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6-1125P-201ENST00000363601 107 ntBASIC1.53□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6-480P-201ENST00000384332 107 ntBASIC1.53□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 MIR181B2-201ENST00000385004 89 ntBASIC1.53□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6-482P-201ENST00000391068 107 ntBASIC1.53□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.593-201ENST00000410292 98 ntBASIC1.53□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU4-83P-201ENST00000410863 133 ntBASIC1.53□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU7-90P-201ENST00000459216 62 ntBASIC1.53□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU6-850P-201ENST00000516934 103 ntBASIC1.53□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 MIR4771-2-201ENST00000577758 74 ntBASIC1.53□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 MIR4771-1-201ENST00000582617 74 ntBASIC1.53□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 AC062037.1-201ENST00000605302 128 ntBASIC1.53□□□□□ -2.16
NPHP3-ACAD11A0A0J9YXS1 RNU4-58P-201ENST00000363192 141 ntBASIC1.52□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNU6-53P-201ENST00000365367 106 ntBASIC1.52□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 SNORA26.2-201ENST00000390922 122 ntBASIC1.52□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 RNY4P29-201ENST00000410801 97 ntBASIC1.52□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 SNORA70.22-201ENST00000517160 124 ntBASIC1.52□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 AL513043.2-201ENST00000573941 143 ntBASIC1.52□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 AC025521.1-201ENST00000621624 286 ntBASIC1.52□□□□□ -2.17
NPHP3-ACAD11A0A0J9YXS1 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 228.8 ms