Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 SNORA77B-201ENST00000578179 125 ntBASIC2.31□□□□□ -2.04
USP3Q9Y6I4 RNA5SP276-201ENST00000362580 94 ntBASIC2.3□□□□□ -2.04
USP3Q9Y6I4 Y_RNA.119-201ENST00000363301 96 ntBASIC2.3□□□□□ -2.04
USP3Q9Y6I4 RNU6-53P-201ENST00000365367 106 ntBASIC2.3□□□□□ -2.04
USP3Q9Y6I4 SNORA6-201ENST00000384033 151 ntBASIC2.3□□□□□ -2.04
USP3Q9Y6I4 AC073261.1-201ENST00000429409 121 ntBASIC2.3□□□□□ -2.04
USP3Q9Y6I4 SNORD4B-201ENST00000459083 72 ntBASIC2.3□□□□□ -2.04
USP3Q9Y6I4 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
USP3Q9Y6I4 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.3□□□□□ -2.04
USP3Q9Y6I4 SNORD33-201ENST00000362761 85 ntBASIC2.29□□□□□ -2.04
USP3Q9Y6I4 Y_RNA.94-201ENST00000363068 106 ntBASIC2.29□□□□□ -2.04
USP3Q9Y6I4 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.29□□□□□ -2.04
USP3Q9Y6I4 AP003716.2-201ENST00000528260 108 ntBASIC2.29□□□□□ -2.04
USP3Q9Y6I4 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
USP3Q9Y6I4 AL596028.1-201ENST00000326971 197 ntBASIC2.28□□□□□ -2.04
USP3Q9Y6I4 RNU6-439P-201ENST00000384188 106 ntBASIC2.28□□□□□ -2.04
USP3Q9Y6I4 AC104435.1-201ENST00000483483 166 ntBASIC2.28□□□□□ -2.04
USP3Q9Y6I4 MIR4648-201ENST00000580107 72 ntBASIC2.28□□□□□ -2.04
USP3Q9Y6I4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.27□□□□□ -2.05
USP3Q9Y6I4 U8.2-201ENST00000363156 134 ntBASIC2.27□□□□□ -2.05
USP3Q9Y6I4 SNORA72.6-201ENST00000384520 129 ntBASIC2.27□□□□□ -2.05
USP3Q9Y6I4 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
USP3Q9Y6I4 MIR18B-201ENST00000454574 71 ntBASIC2.27□□□□□ -2.05
USP3Q9Y6I4 MIR5002-201ENST00000584713 97 ntBASIC2.27□□□□□ -2.05
USP3Q9Y6I4 MIR6132-201ENST00000622083 109 ntBASIC2.27□□□□□ -2.05
USP3Q9Y6I4 MIR6873-201ENST00000622788 63 ntBASIC2.27□□□□□ -2.05
USP3Q9Y6I4 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
USP3Q9Y6I4 AC080100.1-201ENST00000624239 5356 ntBASIC2.27□□□□□ -2.05
USP3Q9Y6I4 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
USP3Q9Y6I4 RNU4-83P-201ENST00000410863 133 ntBASIC2.26□□□□□ -2.05
USP3Q9Y6I4 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.26□□□□□ -2.05
USP3Q9Y6I4 RNU6-1194P-201ENST00000516208 104 ntBASIC2.26□□□□□ -2.05
USP3Q9Y6I4 SNORA31.11-201ENST00000516528 139 ntBASIC2.26□□□□□ -2.05
USP3Q9Y6I4 SNORA44.1-201ENST00000517031 108 ntBASIC2.26□□□□□ -2.05
USP3Q9Y6I4 MIR4287-201ENST00000579398 78 ntBASIC2.26□□□□□ -2.05
USP3Q9Y6I4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
USP3Q9Y6I4 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.26□□□□□ -2.05
USP3Q9Y6I4 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
USP3Q9Y6I4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.25□□□□□ -2.05
USP3Q9Y6I4 MIR103A2-201ENST00000362154 78 ntBASIC2.25□□□□□ -2.05
USP3Q9Y6I4 SNORA25.3-201ENST00000363205 127 ntBASIC2.25□□□□□ -2.05
USP3Q9Y6I4 SNORA64-201ENST00000384674 134 ntBASIC2.25□□□□□ -2.05
USP3Q9Y6I4 MIR144-201ENST00000384886 86 ntBASIC2.25□□□□□ -2.05
USP3Q9Y6I4 RNU6-129P-201ENST00000391022 107 ntBASIC2.25□□□□□ -2.05
USP3Q9Y6I4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.25□□□□□ -2.05
USP3Q9Y6I4 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.25□□□□□ -2.05
USP3Q9Y6I4 MIR6895-201ENST00000613497 78 ntBASIC2.25□□□□□ -2.05
USP3Q9Y6I4 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.25□□□□□ -2.05
USP3Q9Y6I4 MIR219B-201ENST00000637023 88 ntBASIC2.25□□□□□ -2.05
USP3Q9Y6I4 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
USP3Q9Y6I4 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
USP3Q9Y6I4 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
USP3Q9Y6I4 RNA5SP264-201ENST00000363115 107 ntBASIC2.24□□□□□ -2.05
USP3Q9Y6I4 RNU4-58P-201ENST00000363192 141 ntBASIC2.24□□□□□ -2.05
USP3Q9Y6I4 RNU6-580P-201ENST00000365159 107 ntBASIC2.24□□□□□ -2.05
USP3Q9Y6I4 RNU6-205P-201ENST00000390858 107 ntBASIC2.24□□□□□ -2.05
USP3Q9Y6I4 RNU6-1254P-201ENST00000391266 104 ntBASIC2.24□□□□□ -2.05
USP3Q9Y6I4 RNU6-380P-201ENST00000410207 107 ntBASIC2.24□□□□□ -2.05
USP3Q9Y6I4 SNORA25.13-201ENST00000516395 103 ntBASIC2.24□□□□□ -2.05
USP3Q9Y6I4 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.24□□□□□ -2.05
USP3Q9Y6I4 SNRPGP19-201ENST00000603826 189 ntBASIC2.24□□□□□ -2.05
USP3Q9Y6I4 MIR6516-201ENST00000630554 81 ntBASIC2.24□□□□□ -2.05
USP3Q9Y6I4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
USP3Q9Y6I4 RNU4-32P-201ENST00000363404 141 ntBASIC2.23□□□□□ -2.05
USP3Q9Y6I4 RNU6-243P-201ENST00000391140 107 ntBASIC2.23□□□□□ -2.05
USP3Q9Y6I4 snoU13.11-201ENST00000459219 104 ntBASIC2.23□□□□□ -2.05
USP3Q9Y6I4 RNU6-947P-201ENST00000516264 106 ntBASIC2.23□□□□□ -2.05
USP3Q9Y6I4 SNORA67.3-201ENST00000384366 140 ntBASIC2.22□□□□□ -2.05
USP3Q9Y6I4 RNU6-1065P-201ENST00000384513 106 ntBASIC2.22□□□□□ -2.05
USP3Q9Y6I4 BX276092.1-201ENST00000427368 251 ntBASIC2.22□□□□□ -2.05
USP3Q9Y6I4 RNU7-85P-201ENST00000458851 63 ntBASIC2.22□□□□□ -2.05
USP3Q9Y6I4 snoU13.9-201ENST00000458927 103 ntBASIC2.22□□□□□ -2.05
USP3Q9Y6I4 MIR5694-201ENST00000581190 76 ntBASIC2.22□□□□□ -2.05
USP3Q9Y6I4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.22□□□□□ -2.05
USP3Q9Y6I4 RNU6-624P-201ENST00000363411 107 ntBASIC2.21□□□□□ -2.06
USP3Q9Y6I4 MIR1185-1-201ENST00000408598 86 ntBASIC2.21□□□□□ -2.06
USP3Q9Y6I4 Y_RNA.660-201ENST00000516002 120 ntBASIC2.21□□□□□ -2.06
USP3Q9Y6I4 RNU6-557P-201ENST00000516842 110 ntBASIC2.21□□□□□ -2.06
USP3Q9Y6I4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC2.21□□□□□ -2.06
USP3Q9Y6I4 RNU7-10P-201ENST00000607194 63 ntBASIC2.21□□□□□ -2.06
USP3Q9Y6I4 RNU6-1094P-201ENST00000362416 104 ntBASIC2.2□□□□□ -2.06
USP3Q9Y6I4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.2□□□□□ -2.06
USP3Q9Y6I4 snoU13.25-201ENST00000458945 104 ntBASIC2.2□□□□□ -2.06
USP3Q9Y6I4 RNU6-65P-201ENST00000516332 98 ntBASIC2.2□□□□□ -2.06
USP3Q9Y6I4 AC145423.2-201ENST00000610631 239 ntBASIC2.2□□□□□ -2.06
USP3Q9Y6I4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
USP3Q9Y6I4 MIRLET7G-201ENST00000362280 84 ntBASIC2.19□□□□□ -2.06
USP3Q9Y6I4 SNORD36A-201ENST00000362874 73 ntBASIC2.19□□□□□ -2.06
USP3Q9Y6I4 RNU6-811P-201ENST00000384069 107 ntBASIC2.19□□□□□ -2.06
USP3Q9Y6I4 Y_RNA.508-201ENST00000384502 114 ntBASIC2.19□□□□□ -2.06
USP3Q9Y6I4 MIR30A-201ENST00000385092 71 ntBASIC2.19□□□□□ -2.06
USP3Q9Y6I4 RNU6-466P-201ENST00000391224 103 ntBASIC2.19□□□□□ -2.06
USP3Q9Y6I4 AC245517.4-201ENST00000448601 281 ntBASIC2.19□□□□□ -2.06
USP3Q9Y6I4 MIR4299-201ENST00000577899 72 ntBASIC2.19□□□□□ -2.06
USP3Q9Y6I4 MIR4536-1-201ENST00000583537 88 ntBASIC2.19□□□□□ -2.06
USP3Q9Y6I4 MIR8063-201ENST00000621930 81 ntBASIC2.19□□□□□ -2.06
USP3Q9Y6I4 ZNF355P-201ENST00000427301 3216 ntBASIC2.19□□□□□ -2.06
USP3Q9Y6I4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.19□□□□□ -2.06
USP3Q9Y6I4 MIR302D-201ENST00000362275 68 ntBASIC2.18□□□□□ -2.06
USP3Q9Y6I4 SNORA16B-201ENST00000364674 135 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 241.3 ms