Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MIR206-201ENST00000384872 86 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 RNU6-816P-201ENST00000390914 107 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 RNU6-1268P-201ENST00000391214 107 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 RNU6-1239P-201ENST00000391310 107 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 SNORD93-201ENST00000408813 74 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 SNORD83.1-201ENST00000411362 77 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 RNU6-589P-201ENST00000516485 107 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 RNU6-919P-201ENST00000516731 104 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 Y_RNA.709-201ENST00000516952 92 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 RNU6-94P-201ENST00000607728 107 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 MIR7974-201ENST00000615835 79 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 AL035470.1-201ENST00000622571 220 ntBASIC1.4□□□□□ -2.19
TRIM39Q9HCM9 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 RNU6-363P-201ENST00000362895 105 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 RNU6-865P-201ENST00000364772 107 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 SNORD115-35-201ENST00000365122 82 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 RNU6-409P-201ENST00000384114 104 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 Y_RNA.549-201ENST00000384657 102 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 MIR19B1-201ENST00000384829 87 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 MIR200A-201ENST00000384875 90 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 FABP5P4-201ENST00000437203 171 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 AC108729.3-201ENST00000513484 108 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 RNU1-92P-201ENST00000517017 135 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 MIR4771-2-201ENST00000577758 74 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 MIR4771-1-201ENST00000582617 74 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 Y_RNA.773-201ENST00000607168 90 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 AL136317.1-201ENST00000612653 226 ntBASIC1.39□□□□□ -2.19
TRIM39Q9HCM9 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.38□□□□□ -2.19
TRIM39Q9HCM9 MIR1-1-201ENST00000362147 71 ntBASIC1.38□□□□□ -2.19
TRIM39Q9HCM9 RNU6-1107P-201ENST00000364817 104 ntBASIC1.38□□□□□ -2.19
TRIM39Q9HCM9 RNU6-215P-201ENST00000365169 102 ntBASIC1.38□□□□□ -2.19
TRIM39Q9HCM9 RNU6-53P-201ENST00000365367 106 ntBASIC1.38□□□□□ -2.19
TRIM39Q9HCM9 SNORD20-201ENST00000384550 80 ntBASIC1.38□□□□□ -2.19
TRIM39Q9HCM9 RPS26P5-201ENST00000418544 335 ntBASIC1.38□□□□□ -2.19
TRIM39Q9HCM9 RNU7-185P-201ENST00000459215 60 ntBASIC1.38□□□□□ -2.19
TRIM39Q9HCM9 RNA5SP61-201ENST00000516453 100 ntBASIC1.38□□□□□ -2.19
TRIM39Q9HCM9 AC068339.1-201ENST00000526965 141 ntBASIC1.38□□□□□ -2.19
TRIM39Q9HCM9 uc_338.6-201ENST00000613544 171 ntBASIC1.38□□□□□ -2.19
TRIM39Q9HCM9 MIR1255B1-201ENST00000636325 63 ntBASIC1.38□□□□□ -2.19
TRIM39Q9HCM9 Y_RNA.98-201ENST00000363109 102 ntBASIC1.37□□□□□ -2.19
TRIM39Q9HCM9 Y_RNA.448-201ENST00000384185 108 ntBASIC1.37□□□□□ -2.19
TRIM39Q9HCM9 MIR100-201ENST00000385259 80 ntBASIC1.37□□□□□ -2.19
TRIM39Q9HCM9 U8.15-201ENST00000390947 134 ntBASIC1.37□□□□□ -2.19
TRIM39Q9HCM9 RNU6-733P-201ENST00000410759 104 ntBASIC1.37□□□□□ -2.19
TRIM39Q9HCM9 RPS29P28-201ENST00000446439 141 ntBASIC1.37□□□□□ -2.19
TRIM39Q9HCM9 RNU6-521P-201ENST00000516663 105 ntBASIC1.37□□□□□ -2.19
TRIM39Q9HCM9 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.37□□□□□ -2.19
TRIM39Q9HCM9 MIR4421-201ENST00000578133 69 ntBASIC1.37□□□□□ -2.19
TRIM39Q9HCM9 AL391516.1-201ENST00000554380 2449 ntBASIC1.37□□□□□ -2.19
TRIM39Q9HCM9 SNORA7.1-201ENST00000363750 139 ntBASIC1.36□□□□□ -2.19
TRIM39Q9HCM9 MIR618-201ENST00000385287 98 ntBASIC1.36□□□□□ -2.19
TRIM39Q9HCM9 SNORA7.5-201ENST00000410672 110 ntBASIC1.36□□□□□ -2.19
TRIM39Q9HCM9 snoU13.21-201ENST00000459368 105 ntBASIC1.36□□□□□ -2.19
TRIM39Q9HCM9 MIR4498-201ENST00000577599 66 ntBASIC1.36□□□□□ -2.19
TRIM39Q9HCM9 MIR5009-201ENST00000578736 100 ntBASIC1.36□□□□□ -2.19
TRIM39Q9HCM9 snoU13.31-201ENST00000607291 104 ntBASIC1.36□□□□□ -2.19
TRIM39Q9HCM9 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.36□□□□□ -2.19
TRIM39Q9HCM9 AC105081.1-201ENST00000617727 106 ntBASIC1.36□□□□□ -2.19
TRIM39Q9HCM9 RNU1-36P-201ENST00000365130 165 ntBASIC1.35□□□□□ -2.19
TRIM39Q9HCM9 RNU7-48P-201ENST00000458875 63 ntBASIC1.35□□□□□ -2.19
TRIM39Q9HCM9 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.34□□□□□ -2.19
TRIM39Q9HCM9 RNU1-124P-201ENST00000363861 145 ntBASIC1.34□□□□□ -2.19
TRIM39Q9HCM9 U8.6-201ENST00000364939 135 ntBASIC1.34□□□□□ -2.19
TRIM39Q9HCM9 Y_RNA.323-201ENST00000365157 109 ntBASIC1.34□□□□□ -2.19
TRIM39Q9HCM9 RNU6-1321P-201ENST00000390905 107 ntBASIC1.34□□□□□ -2.19
TRIM39Q9HCM9 MIR942-201ENST00000401111 86 ntBASIC1.34□□□□□ -2.19
TRIM39Q9HCM9 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.34□□□□□ -2.19
TRIM39Q9HCM9 RNU6-977P-201ENST00000516411 103 ntBASIC1.34□□□□□ -2.19
TRIM39Q9HCM9 RNU6-1018P-201ENST00000516577 106 ntBASIC1.34□□□□□ -2.19
TRIM39Q9HCM9 RNA5SP404-201ENST00000517118 132 ntBASIC1.34□□□□□ -2.19
TRIM39Q9HCM9 AL512310.12-203ENST00000640543 90 ntBASIC1.34□□□□□ -2.19
TRIM39Q9HCM9 RNY1P2-201ENST00000364820 117 ntBASIC1.33□□□□□ -2.2
TRIM39Q9HCM9 Y_RNA.328-201ENST00000365208 113 ntBASIC1.33□□□□□ -2.2
TRIM39Q9HCM9 SNORA22-201ENST00000383907 134 ntBASIC1.33□□□□□ -2.2
TRIM39Q9HCM9 RNU6-1014P-201ENST00000383940 103 ntBASIC1.33□□□□□ -2.2
TRIM39Q9HCM9 SNORD38.2-201ENST00000384470 69 ntBASIC1.33□□□□□ -2.2
TRIM39Q9HCM9 MIR125B2-201ENST00000385128 89 ntBASIC1.33□□□□□ -2.2
TRIM39Q9HCM9 MIR1302-5-201ENST00000408164 150 ntBASIC1.33□□□□□ -2.2
TRIM39Q9HCM9 RNU4-83P-201ENST00000410863 133 ntBASIC1.33□□□□□ -2.2
TRIM39Q9HCM9 AL035461.1-201ENST00000421490 332 ntBASIC1.33□□□□□ -2.2
TRIM39Q9HCM9 RNU6-1053P-201ENST00000515930 101 ntBASIC1.33□□□□□ -2.2
TRIM39Q9HCM9 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.33□□□□□ -2.2
TRIM39Q9HCM9 AP001362.1-201ENST00000625165 124 ntBASIC1.33□□□□□ -2.2
TRIM39Q9HCM9 RNU6-403P-201ENST00000363163 104 ntBASIC1.32□□□□□ -2.2
TRIM39Q9HCM9 SNORD114-24-201ENST00000365029 72 ntBASIC1.32□□□□□ -2.2
TRIM39Q9HCM9 RNU6-364P-201ENST00000384387 107 ntBASIC1.32□□□□□ -2.2
TRIM39Q9HCM9 RNY4P18-201ENST00000391107 89 ntBASIC1.32□□□□□ -2.2
TRIM39Q9HCM9 MIR938-201ENST00000401216 83 ntBASIC1.32□□□□□ -2.2
TRIM39Q9HCM9 MIR1827-201ENST00000408549 66 ntBASIC1.32□□□□□ -2.2
TRIM39Q9HCM9 DEFB131E-201ENST00000532329 154 ntBASIC1.32□□□□□ -2.2
TRIM39Q9HCM9 MIR4676-201ENST00000583078 72 ntBASIC1.32□□□□□ -2.2
TRIM39Q9HCM9 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
TRIM39Q9HCM9 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.31□□□□□ -2.2
TRIM39Q9HCM9 RNU6-939P-201ENST00000384634 107 ntBASIC1.31□□□□□ -2.2
TRIM39Q9HCM9 MIR150-201ENST00000385048 84 ntBASIC1.31□□□□□ -2.2
TRIM39Q9HCM9 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.31□□□□□ -2.2
TRIM39Q9HCM9 RNU1-123P-201ENST00000458950 160 ntBASIC1.31□□□□□ -2.2
TRIM39Q9HCM9 RNU6-1110P-201ENST00000516462 101 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 180.5 ms