Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU4-83P-201ENST00000410863 133 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-1086P-201ENST00000410930 100 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-1217P-201ENST00000411276 104 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-785P-201ENST00000411324 104 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 MIR1270-201ENST00000459320 83 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU7-123P-201ENST00000515911 60 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 MIR548X2-201ENST00000579776 100 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 MIR4491-201ENST00000581087 68 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 SNORD92-201ENST00000585078 85 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 U6.90-201ENST00000614007 104 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 MIR8066-201ENST00000617280 78 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 U6.70-201ENST00000620287 104 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 MIR6835-201ENST00000621552 64 ntBASIC0.62□□□□□ -2.31
NKX3-1Q99801 RNU6-403P-201ENST00000363163 104 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 Y_RNA.170-201ENST00000363746 110 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 Y_RNA.180-201ENST00000363867 113 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 Y_RNA.400-201ENST00000383963 111 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 RNU6-949P-201ENST00000384040 107 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 RNU6-110P-201ENST00000384508 104 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 RNU6-1104P-201ENST00000384723 104 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 MIR569-201ENST00000385228 96 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.61□□□□□ -2.31
NKX3-1Q99801 MIR513C-201ENST00000401352 84 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 Y_RNA.617-201ENST00000410920 90 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 RNU6-255P-201ENST00000516957 105 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 RNU7-35P-201ENST00000517174 62 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 AC022523.2-201ENST00000561045 150 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 MIR3121-201ENST00000579680 77 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 MIR3612-201ENST00000579753 87 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 AC022709.1-201ENST00000615967 87 ntBASIC0.61□□□□□ -2.31
NKX3-1Q99801 Y_RNA.13-201ENST00000362403 112 ntBASIC0.6□□□□□ -2.31
NKX3-1Q99801 Y_RNA.420-201ENST00000384043 110 ntBASIC0.6□□□□□ -2.31
NKX3-1Q99801 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.6□□□□□ -2.31
NKX3-1Q99801 AC004941.2-201ENST00000427009 228 ntBASIC0.6□□□□□ -2.31
NKX3-1Q99801 RPL39P25-201ENST00000449384 154 ntBASIC0.6□□□□□ -2.31
NKX3-1Q99801 COX6CP6-201ENST00000490840 228 ntBASIC0.6□□□□□ -2.31
NKX3-1Q99801 IGKV1-22-201ENST00000524313 326 ntBASIC0.6□□□□□ -2.31
NKX3-1Q99801 AL590095.2-201ENST00000604136 117 ntBASIC0.6□□□□□ -2.31
NKX3-1Q99801 Y_RNA.298-201ENST00000364960 107 ntBASIC0.59□□□□□ -2.31
NKX3-1Q99801 MIR4714-201ENST00000580728 77 ntBASIC0.59□□□□□ -2.31
NKX3-1Q99801 AC090897.1-201ENST00000580909 226 ntBASIC0.59□□□□□ -2.31
NKX3-1Q99801 AL359881.1-201ENST00000602916 267 ntBASIC0.59□□□□□ -2.31
NKX3-1Q99801 AL137067.1-201ENST00000615933 120 ntBASIC0.59□□□□□ -2.31
NKX3-1Q99801 MIR18A-201ENST00000362310 71 ntBASIC0.58□□□□□ -2.32
NKX3-1Q99801 Y_RNA.42-201ENST00000362660 108 ntBASIC0.58□□□□□ -2.32
NKX3-1Q99801 SNORA36.2-201ENST00000384004 127 ntBASIC0.58□□□□□ -2.32
NKX3-1Q99801 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.58□□□□□ -2.32
NKX3-1Q99801 RNU7-200P-201ENST00000516105 62 ntBASIC0.58□□□□□ -2.32
NKX3-1Q99801 RNU6-346P-201ENST00000516288 111 ntBASIC0.58□□□□□ -2.32
NKX3-1Q99801 SNORD67.1-201ENST00000516618 108 ntBASIC0.58□□□□□ -2.32
NKX3-1Q99801 RNY4P20-201ENST00000516678 93 ntBASIC0.58□□□□□ -2.32
NKX3-1Q99801 SNORA25.16-201ENST00000516741 121 ntBASIC0.58□□□□□ -2.32
NKX3-1Q99801 MIR3668-201ENST00000582138 75 ntBASIC0.58□□□□□ -2.32
NKX3-1Q99801 Y_RNA.464-201ENST00000384282 110 ntBASIC0.57□□□□□ -2.32
NKX3-1Q99801 SNORA72.6-201ENST00000384520 129 ntBASIC0.57□□□□□ -2.32
NKX3-1Q99801 MIR598-201ENST00000384868 97 ntBASIC0.57□□□□□ -2.32
NKX3-1Q99801 MT-TR-201ENST00000387439 65 ntBASIC0.57□□□□□ -2.32
NKX3-1Q99801 SNORD100-201ENST00000408573 76 ntBASIC0.57□□□□□ -2.32
NKX3-1Q99801 AC002350.1-201ENST00000490759 375 ntBASIC0.57□□□□□ -2.32
NKX3-1Q99801 RNU6-426P-201ENST00000516464 97 ntBASIC0.57□□□□□ -2.32
NKX3-1Q99801 Y_RNA.692-201ENST00000516627 105 ntBASIC0.57□□□□□ -2.32
NKX3-1Q99801 AP001328.1-201ENST00000528550 176 ntBASIC0.57□□□□□ -2.32
NKX3-1Q99801 MIR6082-201ENST00000613604 109 ntBASIC0.57□□□□□ -2.32
NKX3-1Q99801 AC105081.1-201ENST00000617727 106 ntBASIC0.57□□□□□ -2.32
NKX3-1Q99801 AP001340.1-201ENST00000624405 217 ntBASIC0.57□□□□□ -2.32
NKX3-1Q99801 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
NKX3-1Q99801 Y_RNA.114-201ENST00000363265 113 ntBASIC0.56□□□□□ -2.32
NKX3-1Q99801 MT-TI-201ENST00000387365 69 ntBASIC0.56□□□□□ -2.32
NKX3-1Q99801 RNA5SP436-201ENST00000516020 115 ntBASIC0.56□□□□□ -2.32
NKX3-1Q99801 RNU7-137P-201ENST00000516788 62 ntBASIC0.56□□□□□ -2.32
NKX3-1Q99801 RNU6-448P-201ENST00000517052 107 ntBASIC0.56□□□□□ -2.32
NKX3-1Q99801 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.56□□□□□ -2.32
NKX3-1Q99801 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.56□□□□□ -2.32
NKX3-1Q99801 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
NKX3-1Q99801 Y_RNA.488-201ENST00000384403 102 ntBASIC0.55□□□□□ -2.32
NKX3-1Q99801 RNU6-1212P-201ENST00000517023 104 ntBASIC0.55□□□□□ -2.32
NKX3-1Q99801 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.55□□□□□ -2.32
NKX3-1Q99801 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
NKX3-1Q99801 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.54□□□□□ -2.32
NKX3-1Q99801 Y_RNA.506-201ENST00000384494 102 ntBASIC0.54□□□□□ -2.32
NKX3-1Q99801 MIR613-201ENST00000385248 95 ntBASIC0.54□□□□□ -2.32
NKX3-1Q99801 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.54□□□□□ -2.32
NKX3-1Q99801 RNU6-679P-201ENST00000391003 106 ntBASIC0.54□□□□□ -2.32
NKX3-1Q99801 MIR548I1-201ENST00000408810 149 ntBASIC0.54□□□□□ -2.32
NKX3-1Q99801 RNU4-69P-201ENST00000410677 143 ntBASIC0.54□□□□□ -2.32
NKX3-1Q99801 RNU6-733P-201ENST00000410759 104 ntBASIC0.54□□□□□ -2.32
NKX3-1Q99801 MTND5P34-201ENST00000568888 325 ntBASIC0.54□□□□□ -2.32
NKX3-1Q99801 RN7SKP19-201ENST00000516016 252 ntBASIC0.53□□□□□ -2.32
NKX3-1Q99801 RNU6-531P-201ENST00000516694 104 ntBASIC0.53□□□□□ -2.32
NKX3-1Q99801 U6.109-201ENST00000636749 87 ntBASIC0.53□□□□□ -2.32
NKX3-1Q99801 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.52□□□□□ -2.33
NKX3-1Q99801 RNA5SP133-201ENST00000363368 119 ntBASIC0.52□□□□□ -2.33
NKX3-1Q99801 Y_RNA.280-201ENST00000364765 112 ntBASIC0.52□□□□□ -2.33
NKX3-1Q99801 RNA5SP117-201ENST00000365294 118 ntBASIC0.52□□□□□ -2.33
NKX3-1Q99801 MIR644A-201ENST00000385262 94 ntBASIC0.52□□□□□ -2.33
NKX3-1Q99801 MIR140-201ENST00000385282 100 ntBASIC0.52□□□□□ -2.33
NKX3-1Q99801 RNU6-1307P-201ENST00000391012 103 ntBASIC0.52□□□□□ -2.33
NKX3-1Q99801 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.52□□□□□ -2.33
NKX3-1Q99801 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.52□□□□□ -2.33
NKX3-1Q99801 AC138749.4-201ENST00000563970 127 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 221.5 ms