Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 Y_RNA.620-201ENST00000411009 88 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 RNU7-43P-201ENST00000516554 64 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 SNORD67.1-201ENST00000516618 108 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 AL512310.8-201ENST00000550183 120 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 MIR3664-201ENST00000579074 99 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 MIR5588-201ENST00000581890 63 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 AL357312.1-201ENST00000603879 298 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 AC096720.1-201ENST00000604441 183 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 MIR3202-2-201ENST00000635980 79 ntBASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
CLIP3Q96DZ5 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
CLIP3Q96DZ5 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.75□□□□□ -2.13
CLIP3Q96DZ5 RNU6-1067P-201ENST00000384752 107 ntBASIC1.75□□□□□ -2.13
CLIP3Q96DZ5 SNORA25.15-201ENST00000516487 89 ntBASIC1.75□□□□□ -2.13
CLIP3Q96DZ5 MIR548AO-201ENST00000579992 96 ntBASIC1.75□□□□□ -2.13
CLIP3Q96DZ5 AC025521.1-201ENST00000621624 286 ntBASIC1.75□□□□□ -2.13
CLIP3Q96DZ5 AC084768.2-201ENST00000622736 221 ntBASIC1.75□□□□□ -2.13
CLIP3Q96DZ5 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
CLIP3Q96DZ5 RNU1-17P-201ENST00000363022 152 ntBASIC1.74□□□□□ -2.13
CLIP3Q96DZ5 SNORD116-10-201ENST00000363791 102 ntBASIC1.74□□□□□ -2.13
CLIP3Q96DZ5 SNORD38.1-201ENST00000363863 68 ntBASIC1.74□□□□□ -2.13
CLIP3Q96DZ5 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.74□□□□□ -2.13
CLIP3Q96DZ5 RNU7-171P-201ENST00000459581 62 ntBASIC1.74□□□□□ -2.13
CLIP3Q96DZ5 RNU7-79P-201ENST00000516082 62 ntBASIC1.74□□□□□ -2.13
CLIP3Q96DZ5 RNU7-137P-201ENST00000516788 62 ntBASIC1.74□□□□□ -2.13
CLIP3Q96DZ5 MIR4668-201ENST00000582284 70 ntBASIC1.74□□□□□ -2.13
CLIP3Q96DZ5 RNU6-86P-201ENST00000606534 107 ntBASIC1.74□□□□□ -2.13
CLIP3Q96DZ5 AC103810.7-201ENST00000607821 91 ntBASIC1.74□□□□□ -2.13
CLIP3Q96DZ5 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.74□□□□□ -2.13
CLIP3Q96DZ5 RNA5SP363-201ENST00000365072 115 ntBASIC1.73□□□□□ -2.13
CLIP3Q96DZ5 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
CLIP3Q96DZ5 RNU6-1321P-201ENST00000390905 107 ntBASIC1.73□□□□□ -2.13
CLIP3Q96DZ5 RNA5SP458-201ENST00000516188 119 ntBASIC1.73□□□□□ -2.13
CLIP3Q96DZ5 MIR4666B-201ENST00000578142 81 ntBASIC1.73□□□□□ -2.13
CLIP3Q96DZ5 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.73□□□□□ -2.13
CLIP3Q96DZ5 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.73□□□□□ -2.13
CLIP3Q96DZ5 RNU6-1244P-201ENST00000363614 108 ntBASIC1.72□□□□□ -2.13
CLIP3Q96DZ5 Y_RNA.354-201ENST00000365448 111 ntBASIC1.72□□□□□ -2.13
CLIP3Q96DZ5 Y_RNA.448-201ENST00000384185 108 ntBASIC1.72□□□□□ -2.13
CLIP3Q96DZ5 MIR520C-201ENST00000385005 87 ntBASIC1.72□□□□□ -2.13
CLIP3Q96DZ5 MIR9-3-201ENST00000385084 90 ntBASIC1.72□□□□□ -2.13
CLIP3Q96DZ5 RNU6-1086P-201ENST00000410930 100 ntBASIC1.72□□□□□ -2.13
CLIP3Q96DZ5 RNU7-41P-201ENST00000515917 61 ntBASIC1.72□□□□□ -2.13
CLIP3Q96DZ5 AC020891.4-201ENST00000605745 93 ntBASIC1.72□□□□□ -2.13
CLIP3Q96DZ5 MIR8081-201ENST00000611533 95 ntBASIC1.72□□□□□ -2.13
CLIP3Q96DZ5 SNORD114-10-201ENST00000363409 72 ntBASIC1.71□□□□□ -2.14
CLIP3Q96DZ5 SNORA16.1-201ENST00000364597 132 ntBASIC1.71□□□□□ -2.14
CLIP3Q96DZ5 RNY1P13-201ENST00000365030 105 ntBASIC1.71□□□□□ -2.14
CLIP3Q96DZ5 RNU6-242P-201ENST00000384359 107 ntBASIC1.71□□□□□ -2.14
CLIP3Q96DZ5 RNY1P4-201ENST00000384595 115 ntBASIC1.71□□□□□ -2.14
CLIP3Q96DZ5 RNU6-997P-201ENST00000384725 107 ntBASIC1.71□□□□□ -2.14
CLIP3Q96DZ5 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.71□□□□□ -2.14
CLIP3Q96DZ5 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.71□□□□□ -2.14
CLIP3Q96DZ5 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.71□□□□□ -2.14
CLIP3Q96DZ5 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
CLIP3Q96DZ5 AC105081.1-201ENST00000617727 106 ntBASIC1.71□□□□□ -2.14
CLIP3Q96DZ5 Y_RNA.313-201ENST00000365095 103 ntBASIC1.7□□□□□ -2.14
CLIP3Q96DZ5 MIR548G-201ENST00000408442 89 ntBASIC1.7□□□□□ -2.14
CLIP3Q96DZ5 RN7SKP88-201ENST00000516847 250 ntBASIC1.7□□□□□ -2.14
CLIP3Q96DZ5 7SK.8-201ENST00000612110 250 ntBASIC1.7□□□□□ -2.14
CLIP3Q96DZ5 7SK.11-201ENST00000615477 250 ntBASIC1.7□□□□□ -2.14
CLIP3Q96DZ5 7SK.13-201ENST00000622040 250 ntBASIC1.7□□□□□ -2.14
CLIP3Q96DZ5 MIR4251-201ENST00000635819 61 ntBASIC1.7□□□□□ -2.14
CLIP3Q96DZ5 AC006160.2-201ENST00000637708 154 ntBASIC1.7□□□□□ -2.14
CLIP3Q96DZ5 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
CLIP3Q96DZ5 Y_RNA.173-201ENST00000363776 113 ntBASIC1.69□□□□□ -2.14
CLIP3Q96DZ5 RNA5SP190-201ENST00000365222 118 ntBASIC1.69□□□□□ -2.14
CLIP3Q96DZ5 RNU6-279P-201ENST00000391297 101 ntBASIC1.69□□□□□ -2.14
CLIP3Q96DZ5 RNU6-613P-201ENST00000410412 108 ntBASIC1.69□□□□□ -2.14
CLIP3Q96DZ5 RPS29P28-201ENST00000446439 141 ntBASIC1.69□□□□□ -2.14
CLIP3Q96DZ5 AC009474.2-201ENST00000451383 136 ntBASIC1.69□□□□□ -2.14
CLIP3Q96DZ5 SNORD111.1-201ENST00000516421 86 ntBASIC1.69□□□□□ -2.14
CLIP3Q96DZ5 CYP3A52P-201ENST00000563326 91 ntBASIC1.69□□□□□ -2.14
CLIP3Q96DZ5 MIR502-201ENST00000606349 86 ntBASIC1.69□□□□□ -2.14
CLIP3Q96DZ5 Y_RNA.4-201ENST00000362333 112 ntBASIC1.68□□□□□ -2.14
CLIP3Q96DZ5 RNU6-509P-201ENST00000363519 107 ntBASIC1.68□□□□□ -2.14
CLIP3Q96DZ5 Y_RNA.191-201ENST00000363972 113 ntBASIC1.68□□□□□ -2.14
CLIP3Q96DZ5 Y_RNA.567-201ENST00000384736 106 ntBASIC1.68□□□□□ -2.14
CLIP3Q96DZ5 AC244023.1-201ENST00000426884 112 ntBASIC1.68□□□□□ -2.14
CLIP3Q96DZ5 RNU7-48P-201ENST00000458875 63 ntBASIC1.68□□□□□ -2.14
CLIP3Q96DZ5 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.68□□□□□ -2.14
CLIP3Q96DZ5 RPS29P11-201ENST00000496507 171 ntBASIC1.68□□□□□ -2.14
CLIP3Q96DZ5 RNU6-165P-201ENST00000517170 99 ntBASIC1.68□□□□□ -2.14
CLIP3Q96DZ5 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.68□□□□□ -2.14
CLIP3Q96DZ5 MIR4419B-201ENST00000577260 68 ntBASIC1.68□□□□□ -2.14
CLIP3Q96DZ5 AC242498.1-201ENST00000604134 111 ntBASIC1.68□□□□□ -2.14
CLIP3Q96DZ5 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-633P-201ENST00000362612 103 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-865P-201ENST00000364772 107 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-1237P-201ENST00000384777 107 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 MIR1302-7-201ENST00000408841 72 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-447P-201ENST00000410293 104 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-1118P-201ENST00000410382 104 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-1076P-201ENST00000410397 104 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-355P-201ENST00000410427 104 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-791P-201ENST00000410467 104 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-705P-201ENST00000410601 104 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 176.6 ms