Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RNU6-524P-201ENST00000384270 107 ntBASIC-1.47□□□□□ -2.65
USF3Q68DE3 RNU6-332P-201ENST00000391193 108 ntBASIC-1.47□□□□□ -2.65
USF3Q68DE3 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.47□□□□□ -2.65
USF3Q68DE3 MIR1270-201ENST00000459320 83 ntBASIC-1.47□□□□□ -2.65
USF3Q68DE3 RNU6-559P-201ENST00000516151 98 ntBASIC-1.47□□□□□ -2.65
USF3Q68DE3 RNU6-118P-201ENST00000516552 102 ntBASIC-1.47□□□□□ -2.65
USF3Q68DE3 RNU7-70P-201ENST00000516941 66 ntBASIC-1.47□□□□□ -2.65
USF3Q68DE3 AL359881.1-201ENST00000602916 267 ntBASIC-1.47□□□□□ -2.65
USF3Q68DE3 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-1.47□□□□□ -2.65
USF3Q68DE3 AC068137.3-201ENST00000639191 341 ntBASIC-1.47□□□□□ -2.65
USF3Q68DE3 Y_RNA.212-201ENST00000364177 102 ntBASIC-1.48□□□□□ -2.65
USF3Q68DE3 SNORD115-20-201ENST00000365099 82 ntBASIC-1.48□□□□□ -2.65
USF3Q68DE3 RNU6-337P-201ENST00000391243 106 ntBASIC-1.48□□□□□ -2.65
USF3Q68DE3 SNORD63.1-201ENST00000516178 80 ntBASIC-1.48□□□□□ -2.65
USF3Q68DE3 FGF7P2-201ENST00000332473 296 ntBASIC-1.48□□□□□ -2.65
USF3Q68DE3 Y_RNA.171-201ENST00000363760 102 ntBASIC-1.48□□□□□ -2.65
USF3Q68DE3 Y_RNA.577-201ENST00000384794 101 ntBASIC-1.48□□□□□ -2.65
USF3Q68DE3 MIR4464-201ENST00000580818 92 ntBASIC-1.48□□□□□ -2.65
USF3Q68DE3 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.48□□□□□ -2.65
USF3Q68DE3 RNA5SP26-201ENST00000362406 119 ntBASIC-1.49□□□□□ -2.65
USF3Q68DE3 Y_RNA.304-201ENST00000365011 112 ntBASIC-1.49□□□□□ -2.65
USF3Q68DE3 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.49□□□□□ -2.65
USF3Q68DE3 Y_RNA.473-201ENST00000384333 102 ntBASIC-1.49□□□□□ -2.65
USF3Q68DE3 Y_RNA.556-201ENST00000384677 113 ntBASIC-1.49□□□□□ -2.65
USF3Q68DE3 MTND2P14-201ENST00000482139 351 ntBASIC-1.49□□□□□ -2.65
USF3Q68DE3 MIR4490-201ENST00000582647 84 ntBASIC-1.49□□□□□ -2.65
USF3Q68DE3 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 MT-TT-201ENST00000387460 66 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 RNU6-695P-201ENST00000391157 104 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 MTND1P34-201ENST00000438556 671 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 MTND2P39-201ENST00000457230 764 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 RNU6-256P-201ENST00000516747 97 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 MIR3942-201ENST00000585264 109 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 MIR1244-1-201ENST00000612829 85 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 MIR1244-3-201ENST00000635744 85 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 MIR1244-2-201ENST00000636449 85 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 MIR1244-4-202ENST00000636813 85 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 RNU6-1059P-201ENST00000363752 98 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 Y_RNA.531-201ENST00000384589 121 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 RNU6-400P-201ENST00000391173 106 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 RNU6-1254P-201ENST00000391266 104 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 RPS3AP52-201ENST00000435639 297 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 Y_RNA.682-201ENST00000516457 100 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 Y_RNA.704-201ENST00000516851 102 ntBASIC-1.5□□□□□ -2.65
USF3Q68DE3 RNU6-235P-201ENST00000362644 107 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 RNU6-888P-201ENST00000363010 101 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 SNORD81.1-201ENST00000363064 77 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 Y_RNA.230-201ENST00000364348 109 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 Y_RNA.529-201ENST00000384586 119 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 ELOCP20-201ENST00000422460 345 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 MIR5692C2-201ENST00000577959 77 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 MIR6128-201ENST00000615528 109 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 Y_RNA.182-201ENST00000363880 111 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 RNU6-99P-201ENST00000364721 107 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 RNU6-308P-201ENST00000390957 107 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 RNA5SP144-201ENST00000410846 116 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 MIR2053-201ENST00000459295 91 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 AP002795.1-201ENST00000534879 84 ntBASIC-1.51□□□□□ -2.65
USF3Q68DE3 Y_RNA.91-201ENST00000363042 107 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 Y_RNA.481-201ENST00000384373 102 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 RNU6-383P-201ENST00000410864 94 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 RNU6-566P-201ENST00000516790 107 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 MRPS36P3-201ENST00000519284 130 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 RNU6-664P-201ENST00000362381 107 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 Y_RNA.127-201ENST00000363386 109 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 RNY3P3-201ENST00000363816 102 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 RNU6-297P-201ENST00000384636 107 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 RNU6-1068P-201ENST00000410958 103 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 AC083798.1-201ENST00000472671 131 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 MIR5701-3-201ENST00000578890 82 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 MIR5701-1-201ENST00000585138 82 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 MIR5701-2-201ENST00000615634 82 ntBASIC-1.52□□□□□ -2.65
USF3Q68DE3 RNA5SP153-201ENST00000516498 76 ntBASIC-1.53□□□□□ -2.65
USF3Q68DE3 MIR376A2-201ENST00000636782 80 ntBASIC-1.53□□□□□ -2.65
USF3Q68DE3 SNORD36A-201ENST00000362874 73 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 RNY3P14-201ENST00000384309 102 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 MIR514A2-201ENST00000385131 88 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 MIR514A3-201ENST00000385132 88 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 RNU6-243P-201ENST00000391140 107 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 RNY4-201ENST00000516507 96 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 AF246928.1-201ENST00000623768 87 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 RNU6-1252P-201ENST00000363054 104 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 RNU6-1205P-201ENST00000363625 106 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 Y_RNA.169-201ENST00000363745 96 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 SNORD27-201ENST00000363981 72 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 Y_RNA.301-201ENST00000364990 103 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 Y_RNA.342-201ENST00000365352 113 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 AL353193.1-201ENST00000421444 268 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC-1.54□□□□□ -2.66
USF3Q68DE3 Y_RNA.655-201ENST00000515919 96 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.54□□□□□ -2.66
USF3Q68DE3 Y_RNA.23-201ENST00000362496 106 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 SNORD115-19-201ENST00000363098 82 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 SNORD115-18-201ENST00000363293 82 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 Y_RNA.201-201ENST00000364052 96 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 SNORD115-17-201ENST00000364612 82 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 Y_RNA.357-201ENST00000365487 109 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-1.55□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms