Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNU6-1321P-201ENST00000390905 107 ntBASIC1.8□□□□□ -2.12
USP39Q53GS9 RNU6-360P-201ENST00000390944 104 ntBASIC1.8□□□□□ -2.12
USP39Q53GS9 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.8□□□□□ -2.12
USP39Q53GS9 RNU4-62P-201ENST00000410125 130 ntBASIC1.8□□□□□ -2.12
USP39Q53GS9 AP1B1P2-201ENST00000416196 106 ntBASIC1.8□□□□□ -2.12
USP39Q53GS9 TRMT112P2-201ENST00000512910 132 ntBASIC1.8□□□□□ -2.12
USP39Q53GS9 RNU7-137P-201ENST00000516788 62 ntBASIC1.8□□□□□ -2.12
USP39Q53GS9 SNORA44.1-201ENST00000517031 108 ntBASIC1.8□□□□□ -2.12
USP39Q53GS9 AL359821.1-201ENST00000605519 182 ntBASIC1.8□□□□□ -2.12
USP39Q53GS9 AC020891.4-201ENST00000605745 93 ntBASIC1.8□□□□□ -2.12
USP39Q53GS9 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.8□□□□□ -2.12
USP39Q53GS9 WWP1P1-201ENST00000466609 2769 ntBASIC1.8□□□□□ -2.12
USP39Q53GS9 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.79□□□□□ -2.12
USP39Q53GS9 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
USP39Q53GS9 RNU6-1244P-201ENST00000363614 108 ntBASIC1.79□□□□□ -2.12
USP39Q53GS9 Y_RNA.313-201ENST00000365095 103 ntBASIC1.79□□□□□ -2.12
USP39Q53GS9 Y_RNA.448-201ENST00000384185 108 ntBASIC1.79□□□□□ -2.12
USP39Q53GS9 RNU6-279P-201ENST00000391297 101 ntBASIC1.79□□□□□ -2.12
USP39Q53GS9 MIR934-201ENST00000401241 83 ntBASIC1.79□□□□□ -2.12
USP39Q53GS9 RNU6-1086P-201ENST00000410930 100 ntBASIC1.79□□□□□ -2.12
USP39Q53GS9 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.79□□□□□ -2.12
USP39Q53GS9 AC105081.1-201ENST00000617727 106 ntBASIC1.79□□□□□ -2.12
USP39Q53GS9 RNU6-1123P-201ENST00000362347 106 ntBASIC1.78□□□□□ -2.12
USP39Q53GS9 SNORD114-10-201ENST00000363409 72 ntBASIC1.78□□□□□ -2.12
USP39Q53GS9 SNORA16.1-201ENST00000364597 132 ntBASIC1.78□□□□□ -2.12
USP39Q53GS9 Y_RNA.354-201ENST00000365448 111 ntBASIC1.78□□□□□ -2.12
USP39Q53GS9 MIR520C-201ENST00000385005 87 ntBASIC1.78□□□□□ -2.12
USP39Q53GS9 MIR653-201ENST00000385279 96 ntBASIC1.78□□□□□ -2.12
USP39Q53GS9 RNU7-41P-201ENST00000515917 61 ntBASIC1.78□□□□□ -2.12
USP39Q53GS9 AC006160.2-201ENST00000637708 154 ntBASIC1.78□□□□□ -2.12
USP39Q53GS9 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.13
USP39Q53GS9 RNU6-1125P-201ENST00000363601 107 ntBASIC1.77□□□□□ -2.13
USP39Q53GS9 Y_RNA.191-201ENST00000363972 113 ntBASIC1.77□□□□□ -2.13
USP39Q53GS9 RNY1P13-201ENST00000365030 105 ntBASIC1.77□□□□□ -2.13
USP39Q53GS9 MIR548G-201ENST00000408442 89 ntBASIC1.77□□□□□ -2.13
USP39Q53GS9 RPS29P28-201ENST00000446439 141 ntBASIC1.77□□□□□ -2.13
USP39Q53GS9 RPS29P11-201ENST00000496507 171 ntBASIC1.77□□□□□ -2.13
USP39Q53GS9 MIR4255-201ENST00000579351 72 ntBASIC1.77□□□□□ -2.13
USP39Q53GS9 AL512598.1-201ENST00000610158 273 ntBASIC1.77□□□□□ -2.13
USP39Q53GS9 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.77□□□□□ -2.13
USP39Q53GS9 Y_RNA.173-201ENST00000363776 113 ntBASIC1.76□□□□□ -2.13
USP39Q53GS9 Y_RNA.244-201ENST00000364484 109 ntBASIC1.76□□□□□ -2.13
USP39Q53GS9 Y_RNA.567-201ENST00000384736 106 ntBASIC1.76□□□□□ -2.13
USP39Q53GS9 RNU6-613P-201ENST00000410412 108 ntBASIC1.76□□□□□ -2.13
USP39Q53GS9 AC004965.1-201ENST00000413033 213 ntBASIC1.76□□□□□ -2.13
USP39Q53GS9 AL161935.2-201ENST00000414627 60 ntBASIC1.76□□□□□ -2.13
USP39Q53GS9 RNA5SP445-201ENST00000515889 115 ntBASIC1.76□□□□□ -2.13
USP39Q53GS9 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.76□□□□□ -2.13
USP39Q53GS9 CYP3A52P-201ENST00000563326 91 ntBASIC1.76□□□□□ -2.13
USP39Q53GS9 MIR548BB-201ENST00000626714 66 ntBASIC1.76□□□□□ -2.13
USP39Q53GS9 MIR4251-201ENST00000635819 61 ntBASIC1.76□□□□□ -2.13
USP39Q53GS9 RNU6-633P-201ENST00000362612 103 ntBASIC1.75□□□□□ -2.13
USP39Q53GS9 RNU6-509P-201ENST00000363519 107 ntBASIC1.75□□□□□ -2.13
USP39Q53GS9 RNU6-865P-201ENST00000364772 107 ntBASIC1.75□□□□□ -2.13
USP39Q53GS9 Y_RNA.437-201ENST00000384113 113 ntBASIC1.75□□□□□ -2.13
USP39Q53GS9 MIR499A-201ENST00000384903 122 ntBASIC1.75□□□□□ -2.13
USP39Q53GS9 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.75□□□□□ -2.13
USP39Q53GS9 RNU7-48P-201ENST00000458875 63 ntBASIC1.75□□□□□ -2.13
USP39Q53GS9 RNU1-98P-201ENST00000458992 160 ntBASIC1.75□□□□□ -2.13
USP39Q53GS9 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.75□□□□□ -2.13
USP39Q53GS9 MIR4285-201ENST00000581001 85 ntBASIC1.75□□□□□ -2.13
USP39Q53GS9 MIR4303-201ENST00000581299 66 ntBASIC1.75□□□□□ -2.13
USP39Q53GS9 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
USP39Q53GS9 SNORA25.9-201ENST00000365087 128 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 Y_RNA.426-201ENST00000384068 113 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-1237P-201ENST00000384777 107 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 MIR30A-201ENST00000385092 71 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-447P-201ENST00000410293 104 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-1118P-201ENST00000410382 104 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-1076P-201ENST00000410397 104 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-355P-201ENST00000410427 104 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-791P-201ENST00000410467 104 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-705P-201ENST00000410601 104 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 Y_RNA.609-201ENST00000410669 89 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 Y_RNA.611-201ENST00000410682 108 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-1100P-201ENST00000410691 104 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-860P-201ENST00000410860 104 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-1217P-201ENST00000411276 104 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-785P-201ENST00000411324 104 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 AC244023.1-201ENST00000426884 112 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 AC009474.2-201ENST00000451383 136 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-857P-201ENST00000515893 110 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 MIR4419B-201ENST00000577260 68 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 AC242498.1-201ENST00000604134 111 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 RNU6-90P-201ENST00000606352 106 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 U6.90-201ENST00000614007 104 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 MIR8070-201ENST00000616510 88 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 MIR7111-201ENST00000619751 72 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 U6.70-201ENST00000620287 104 ntBASIC1.74□□□□□ -2.13
USP39Q53GS9 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.74□□□□□ -2.13
USP39Q53GS9 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.74□□□□□ -2.13
USP39Q53GS9 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.74□□□□□ -2.13
USP39Q53GS9 Y_RNA.98-201ENST00000363109 102 ntBASIC1.73□□□□□ -2.13
USP39Q53GS9 Y_RNA.221-201ENST00000364248 96 ntBASIC1.73□□□□□ -2.13
USP39Q53GS9 SNORD115-27-201ENST00000364430 82 ntBASIC1.73□□□□□ -2.13
USP39Q53GS9 SNORD48-201ENST00000364953 64 ntBASIC1.73□□□□□ -2.13
USP39Q53GS9 SNORD41-201ENST00000386967 70 ntBASIC1.73□□□□□ -2.13
USP39Q53GS9 AC141846.1-201ENST00000568348 142 ntBASIC1.73□□□□□ -2.13
USP39Q53GS9 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 220.9 ms