Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNU7-113P-201ENST00000459273 62 ntBASIC0.93□□□□□ -2.26
HDAC4P56524 ACA64.5-201ENST00000516207 127 ntBASIC0.93□□□□□ -2.26
HDAC4P56524 Y_RNA.681-201ENST00000516445 113 ntBASIC0.93□□□□□ -2.26
HDAC4P56524 RNY4P20-201ENST00000516678 93 ntBASIC0.93□□□□□ -2.26
HDAC4P56524 AC022523.2-201ENST00000561045 150 ntBASIC0.93□□□□□ -2.26
HDAC4P56524 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.93□□□□□ -2.26
HDAC4P56524 RNY1P13-201ENST00000365030 105 ntBASIC0.92□□□□□ -2.26
HDAC4P56524 MT-TI-201ENST00000387365 69 ntBASIC0.92□□□□□ -2.26
HDAC4P56524 Y_RNA.617-201ENST00000410920 90 ntBASIC0.92□□□□□ -2.26
HDAC4P56524 U7.7-201ENST00000459276 60 ntBASIC0.92□□□□□ -2.26
HDAC4P56524 RNU6-1110P-201ENST00000516462 101 ntBASIC0.92□□□□□ -2.26
HDAC4P56524 RNU7-35P-201ENST00000517174 62 ntBASIC0.92□□□□□ -2.26
HDAC4P56524 MIR4771-2-201ENST00000577758 74 ntBASIC0.92□□□□□ -2.26
HDAC4P56524 MIR3973-201ENST00000579824 107 ntBASIC0.92□□□□□ -2.26
HDAC4P56524 MIR4771-1-201ENST00000582617 74 ntBASIC0.92□□□□□ -2.26
HDAC4P56524 MIR548AE2-201ENST00000583456 67 ntBASIC0.92□□□□□ -2.26
HDAC4P56524 MIR373-201ENST00000362273 69 ntBASIC0.91□□□□□ -2.26
HDAC4P56524 SNORD50.2-201ENST00000365465 70 ntBASIC0.91□□□□□ -2.26
HDAC4P56524 MIR146A-201ENST00000385201 99 ntBASIC0.91□□□□□ -2.26
HDAC4P56524 MT-TF-201ENST00000387314 71 ntBASIC0.91□□□□□ -2.26
HDAC4P56524 SNORA40-201ENST00000388090 126 ntBASIC0.91□□□□□ -2.26
HDAC4P56524 SNORD89-201ENST00000390981 114 ntBASIC0.91□□□□□ -2.26
HDAC4P56524 SUMO1P3-201ENST00000439961 304 ntBASIC0.91□□□□□ -2.26
HDAC4P56524 RN7SKP19-201ENST00000516016 252 ntBASIC0.91□□□□□ -2.26
HDAC4P56524 RNU6-781P-201ENST00000516377 101 ntBASIC0.91□□□□□ -2.26
HDAC4P56524 RNA5SP33-201ENST00000516687 98 ntBASIC0.91□□□□□ -2.26
HDAC4P56524 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.9□□□□□ -2.27
HDAC4P56524 MIR1-1-201ENST00000362147 71 ntBASIC0.9□□□□□ -2.27
HDAC4P56524 Y_RNA.433-201ENST00000384089 102 ntBASIC0.9□□□□□ -2.27
HDAC4P56524 MIR100-201ENST00000385259 80 ntBASIC0.9□□□□□ -2.27
HDAC4P56524 U8.15-201ENST00000390947 134 ntBASIC0.9□□□□□ -2.27
HDAC4P56524 RNU6-1086P-201ENST00000410930 100 ntBASIC0.9□□□□□ -2.27
HDAC4P56524 RNU7-185P-201ENST00000459215 60 ntBASIC0.9□□□□□ -2.27
HDAC4P56524 MIR4676-201ENST00000583078 72 ntBASIC0.9□□□□□ -2.27
HDAC4P56524 FAM71BP1-201ENST00000604431 523 ntBASIC0.9□□□□□ -2.27
HDAC4P56524 MIR924-201ENST00000638017 53 ntBASIC0.9□□□□□ -2.27
HDAC4P56524 RNU6-949P-201ENST00000384040 107 ntBASIC0.89□□□□□ -2.27
HDAC4P56524 SNORA32-201ENST00000384072 121 ntBASIC0.89□□□□□ -2.27
HDAC4P56524 RNU7-79P-201ENST00000516082 62 ntBASIC0.89□□□□□ -2.27
HDAC4P56524 MIR4698-201ENST00000577795 80 ntBASIC0.89□□□□□ -2.27
HDAC4P56524 MIR4804-201ENST00000581683 73 ntBASIC0.89□□□□□ -2.27
HDAC4P56524 AC025627.3-201ENST00000582078 182 ntBASIC0.89□□□□□ -2.27
HDAC4P56524 MIR4653-201ENST00000585107 83 ntBASIC0.89□□□□□ -2.27
HDAC4P56524 TUG1_4.1-201ENST00000619464 181 ntBASIC0.89□□□□□ -2.27
HDAC4P56524 AC023934.1-201ENST00000574529 2389 ntBASIC0.89□□□□□ -2.27
HDAC4P56524 RNU6-235P-201ENST00000362644 107 ntBASIC0.88□□□□□ -2.27
HDAC4P56524 Y_RNA.85-201ENST00000363014 111 ntBASIC0.88□□□□□ -2.27
HDAC4P56524 Y_RNA.115-201ENST00000363272 98 ntBASIC0.88□□□□□ -2.27
HDAC4P56524 RNU6-704P-201ENST00000364162 103 ntBASIC0.88□□□□□ -2.27
HDAC4P56524 RNU6-647P-201ENST00000364243 107 ntBASIC0.88□□□□□ -2.27
HDAC4P56524 MIRLET7F2-201ENST00000385277 83 ntBASIC0.88□□□□□ -2.27
HDAC4P56524 RNA5SP237-201ENST00000410414 113 ntBASIC0.88□□□□□ -2.27
HDAC4P56524 RNU6-971P-201ENST00000516920 106 ntBASIC0.88□□□□□ -2.27
HDAC4P56524 AL359881.1-201ENST00000602916 267 ntBASIC0.88□□□□□ -2.27
HDAC4P56524 AC013244.2-201ENST00000603396 103 ntBASIC0.88□□□□□ -2.27
HDAC4P56524 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
HDAC4P56524 HSBP1P2-201ENST00000299671 229 ntBASIC0.87□□□□□ -2.27
HDAC4P56524 MIR608-201ENST00000384820 100 ntBASIC0.87□□□□□ -2.27
HDAC4P56524 MIR125B2-201ENST00000385128 89 ntBASIC0.87□□□□□ -2.27
HDAC4P56524 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.87□□□□□ -2.27
HDAC4P56524 RNU7-56P-201ENST00000458744 62 ntBASIC0.87□□□□□ -2.27
HDAC4P56524 PSMC1P5-201ENST00000512850 177 ntBASIC0.87□□□□□ -2.27
HDAC4P56524 AC008608.1-201ENST00000603910 127 ntBASIC0.87□□□□□ -2.27
HDAC4P56524 AC010487.4-201ENST00000637027 61 ntBASIC0.87□□□□□ -2.27
HDAC4P56524 AL589743.1-201ENST00000551932 2712 ntBASIC0.87□□□□□ -2.27
HDAC4P56524 SNORD114-23-201ENST00000363536 72 ntBASIC0.86□□□□□ -2.27
HDAC4P56524 Y_RNA.218-201ENST00000364218 104 ntBASIC0.86□□□□□ -2.27
HDAC4P56524 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
HDAC4P56524 Y_RNA.525-201ENST00000384570 113 ntBASIC0.86□□□□□ -2.27
HDAC4P56524 MIR605-201ENST00000385078 83 ntBASIC0.86□□□□□ -2.27
HDAC4P56524 Y_RNA.588-201ENST00000391254 102 ntBASIC0.86□□□□□ -2.27
HDAC4P56524 MIR548M-201ENST00000408260 86 ntBASIC0.86□□□□□ -2.27
HDAC4P56524 RNU6-351P-201ENST00000516097 100 ntBASIC0.86□□□□□ -2.27
HDAC4P56524 SNORD114-2-201ENST00000363953 78 ntBASIC0.85□□□□□ -2.27
HDAC4P56524 SNORD105-201ENST00000386910 85 ntBASIC0.85□□□□□ -2.27
HDAC4P56524 RNU6-735P-201ENST00000410612 107 ntBASIC0.85□□□□□ -2.27
HDAC4P56524 RNU4-69P-201ENST00000410677 143 ntBASIC0.85□□□□□ -2.27
HDAC4P56524 Y_RNA.630-201ENST00000411370 108 ntBASIC0.85□□□□□ -2.27
HDAC4P56524 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.85□□□□□ -2.27
HDAC4P56524 RNU6-1211P-201ENST00000459179 105 ntBASIC0.85□□□□□ -2.27
HDAC4P56524 RNU6-977P-201ENST00000516411 103 ntBASIC0.85□□□□□ -2.27
HDAC4P56524 SNORD67.1-201ENST00000516618 108 ntBASIC0.85□□□□□ -2.27
HDAC4P56524 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.85□□□□□ -2.27
HDAC4P56524 MIR8066-201ENST00000617280 78 ntBASIC0.85□□□□□ -2.27
HDAC4P56524 MIR6513-201ENST00000621188 64 ntBASIC0.85□□□□□ -2.27
HDAC4P56524 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.85□□□□□ -2.27
HDAC4P56524 SNORD58C-201ENST00000365223 64 ntBASIC0.84□□□□□ -2.27
HDAC4P56524 MIR520F-201ENST00000384824 87 ntBASIC0.84□□□□□ -2.27
HDAC4P56524 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.84□□□□□ -2.27
HDAC4P56524 MIR1257-201ENST00000408490 117 ntBASIC0.84□□□□□ -2.27
HDAC4P56524 SNORD99-201ENST00000408612 74 ntBASIC0.84□□□□□ -2.27
HDAC4P56524 RPL39P25-201ENST00000449384 154 ntBASIC0.84□□□□□ -2.27
HDAC4P56524 RNU7-107P-201ENST00000459121 61 ntBASIC0.84□□□□□ -2.27
HDAC4P56524 RNU7-137P-201ENST00000516788 62 ntBASIC0.84□□□□□ -2.27
HDAC4P56524 SNORD92-201ENST00000585078 85 ntBASIC0.84□□□□□ -2.27
HDAC4P56524 AL353765.1-201ENST00000605514 183 ntBASIC0.84□□□□□ -2.27
HDAC4P56524 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.84□□□□□ -2.27
HDAC4P56524 MIR1263-201ENST00000408324 86 ntBASIC0.83□□□□□ -2.28
HDAC4P56524 RNU6-1234P-201ENST00000516877 103 ntBASIC0.83□□□□□ -2.28
HDAC4P56524 MIR4491-201ENST00000581087 68 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 166.6 ms