Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC-0.94□□□□□ -2.56
FOXA3P55318 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.94□□□□□ -2.56
FOXA3P55318 RNU6-1046P-201ENST00000516538 107 ntBASIC-0.94□□□□□ -2.56
FOXA3P55318 RNU6-1149P-201ENST00000516810 97 ntBASIC-0.94□□□□□ -2.56
FOXA3P55318 RNU7-30P-201ENST00000516835 62 ntBASIC-0.94□□□□□ -2.56
FOXA3P55318 SCARNA15-202ENST00000516881 127 ntBASIC-0.94□□□□□ -2.56
FOXA3P55318 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.94□□□□□ -2.56
FOXA3P55318 Y_RNA.715-201ENST00000517082 110 ntBASIC-0.94□□□□□ -2.56
FOXA3P55318 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-0.94□□□□□ -2.56
FOXA3P55318 MIR4499-201ENST00000584834 69 ntBASIC-0.94□□□□□ -2.56
FOXA3P55318 MIR8068-201ENST00000618032 68 ntBASIC-0.94□□□□□ -2.56
FOXA3P55318 snoU18.1-201ENST00000629629 71 ntBASIC-0.94□□□□□ -2.56
FOXA3P55318 Y_RNA.133-201ENST00000363428 110 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 RNY1P6-201ENST00000384193 109 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 Y_RNA.453-201ENST00000384223 109 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 Y_RNA.471-201ENST00000384312 102 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 Y_RNA.526-201ENST00000384572 110 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 RNU6-130P-201ENST00000411112 103 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC-0.95□□□□□ -2.56
FOXA3P55318 HSPE1P25-201ENST00000455484 251 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 Y_RNA.639-201ENST00000458981 102 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 Y_RNA.635-201ENST00000459041 101 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 MIR1270-201ENST00000459320 83 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 RNU6-274P-201ENST00000459566 107 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 RNU6-453P-201ENST00000516819 85 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 Y_RNA.713-201ENST00000517013 96 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 SNORA40.17-201ENST00000517256 115 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 AC140658.3-201ENST00000567603 271 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 MIR548AX-201ENST00000580117 73 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 AL365205.2-201ENST00000594586 68 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 PART1_1.1-201ENST00000611761 217 ntBASIC-0.95□□□□□ -2.56
FOXA3P55318 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.96□□□□□ -2.56
FOXA3P55318 Y_RNA.152-201ENST00000363578 100 ntBASIC-0.96□□□□□ -2.56
FOXA3P55318 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.96□□□□□ -2.56
FOXA3P55318 RNU6-973P-201ENST00000364690 107 ntBASIC-0.96□□□□□ -2.56
FOXA3P55318 Y_RNA.785-201ENST00000384290 109 ntBASIC-0.96□□□□□ -2.56
FOXA3P55318 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.96□□□□□ -2.56
FOXA3P55318 MIR206-201ENST00000384872 86 ntBASIC-0.96□□□□□ -2.56
FOXA3P55318 AL731563.1-201ENST00000442202 214 ntBASIC-0.96□□□□□ -2.56
FOXA3P55318 MIR6854-201ENST00000614935 69 ntBASIC-0.96□□□□□ -2.56
FOXA3P55318 Y_RNA.80-201ENST00000362996 102 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 SNORD115-35-201ENST00000365122 82 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 Y_RNA.394-201ENST00000383942 103 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 Y_RNA.428-201ENST00000384078 102 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 RNY3P5-201ENST00000384127 102 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 RNU6-571P-201ENST00000384128 107 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 Y_RNA.485-201ENST00000384395 102 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 Y_RNA.531-201ENST00000384589 121 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 MIR516A2-201ENST00000384888 90 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 MIR516A1-201ENST00000385033 90 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 SNORD64-201ENST00000386683 67 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 Y_RNA.653-201ENST00000459091 95 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 RNU6-561P-201ENST00000516222 102 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 Y_RNA.691-201ENST00000516611 103 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 MIR3908-201ENST00000579798 126 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.97□□□□□ -2.56
FOXA3P55318 Y_RNA.51-201ENST00000362725 102 ntBASIC-0.98□□□□□ -2.57
FOXA3P55318 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.98□□□□□ -2.57
FOXA3P55318 RNU6-431P-201ENST00000383874 107 ntBASIC-0.98□□□□□ -2.57
FOXA3P55318 RNU6-476P-201ENST00000384726 107 ntBASIC-0.98□□□□□ -2.57
FOXA3P55318 RNU6-1307P-201ENST00000391012 103 ntBASIC-0.98□□□□□ -2.57
FOXA3P55318 SCARNA17-201ENST00000516183 144 ntBASIC-0.98□□□□□ -2.57
FOXA3P55318 SNORD116.3-201ENST00000517176 78 ntBASIC-0.98□□□□□ -2.57
FOXA3P55318 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC-0.98□□□□□ -2.57
FOXA3P55318 AC007012.1-201ENST00000567192 175 ntBASIC-0.98□□□□□ -2.57
FOXA3P55318 AC009779.6-201ENST00000603972 165 ntBASIC-0.98□□□□□ -2.57
FOXA3P55318 AP001362.1-201ENST00000625165 124 ntBASIC-0.98□□□□□ -2.57
FOXA3P55318 RNU4-90P-201ENST00000362773 141 ntBASIC-0.99□□□□□ -2.57
FOXA3P55318 Y_RNA.127-201ENST00000363386 109 ntBASIC-0.99□□□□□ -2.57
FOXA3P55318 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.99□□□□□ -2.57
FOXA3P55318 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.99□□□□□ -2.57
FOXA3P55318 Y_RNA.303-201ENST00000364998 94 ntBASIC-0.99□□□□□ -2.57
FOXA3P55318 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.99□□□□□ -2.57
FOXA3P55318 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-0.99□□□□□ -2.57
FOXA3P55318 RNU6-570P-201ENST00000517051 105 ntBASIC-0.99□□□□□ -2.57
FOXA3P55318 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-0.99□□□□□ -2.57
FOXA3P55318 MIR376A1-201ENST00000616574 68 ntBASIC-0.99□□□□□ -2.57
FOXA3P55318 Y_RNA.176-201ENST00000363815 109 ntBASIC-1□□□□□ -2.57
FOXA3P55318 Y_RNA.217-201ENST00000364214 105 ntBASIC-1□□□□□ -2.57
FOXA3P55318 snoU2_19.4-201ENST00000364329 80 ntBASIC-1□□□□□ -2.57
FOXA3P55318 SNORD114-15-201ENST00000364687 72 ntBASIC-1□□□□□ -2.57
FOXA3P55318 SNORD74.6-201ENST00000364796 70 ntBASIC-1□□□□□ -2.57
FOXA3P55318 RNU6-905P-201ENST00000384434 107 ntBASIC-1□□□□□ -2.57
FOXA3P55318 SNORA79-201ENST00000408376 140 ntBASIC-1□□□□□ -2.57
FOXA3P55318 AL161932.1-201ENST00000437408 146 ntBASIC-1□□□□□ -2.57
FOXA3P55318 Y_RNA.641-201ENST00000459414 105 ntBASIC-1□□□□□ -2.57
FOXA3P55318 SCARNA17.3-201ENST00000516381 125 ntBASIC-1□□□□□ -2.57
FOXA3P55318 RNU2-35P-201ENST00000516446 142 ntBASIC-1□□□□□ -2.57
FOXA3P55318 SNORA20.3-201ENST00000516880 132 ntBASIC-1□□□□□ -2.57
FOXA3P55318 RNU6-850P-201ENST00000516934 103 ntBASIC-1□□□□□ -2.57
FOXA3P55318 MIR4760-201ENST00000585040 80 ntBASIC-1□□□□□ -2.57
FOXA3P55318 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1□□□□□ -2.57
FOXA3P55318 AC103591.3-201ENST00000608684 209 ntBASIC-1□□□□□ -2.57
FOXA3P55318 AC104985.2-201ENST00000620598 500 ntBASIC-1□□□□□ -2.57
FOXA3P55318 MIR3688-2-201ENST00000636963 87 ntBASIC-1□□□□□ -2.57
FOXA3P55318 SNORA25.1-201ENST00000362326 128 ntBASIC-1.01□□□□□ -2.57
FOXA3P55318 Y_RNA.35-201ENST00000362601 101 ntBASIC-1.01□□□□□ -2.57
FOXA3P55318 Y_RNA.39-201ENST00000362620 98 ntBASIC-1.01□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms