Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-978P-201ENST00000364371 103 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 Y_RNA.470-201ENST00000384307 117 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 RNU4-70P-201ENST00000384579 139 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 RNU6-269P-201ENST00000391077 97 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 MIR548P-201ENST00000408336 84 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 AC244505.6-201ENST00000452829 130 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 Y_RNA.679-201ENST00000516416 91 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 RNU6-1137P-201ENST00000517073 99 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 MIR4282-201ENST00000583613 67 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 SNORA70.25-201ENST00000612741 95 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 AL162376.1-201ENST00000624117 175 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.22□□□□□ -2.44
FOXA1P55317 Y_RNA.56-201ENST00000362798 112 ntBASIC-0.23□□□□□ -2.45
FOXA1P55317 RNU6-161P-201ENST00000363051 106 ntBASIC-0.23□□□□□ -2.45
FOXA1P55317 MIR624-201ENST00000385217 97 ntBASIC-0.23□□□□□ -2.45
FOXA1P55317 RNA5SP163-201ENST00000410304 99 ntBASIC-0.23□□□□□ -2.45
FOXA1P55317 AL121914.1-201ENST00000450188 156 ntBASIC-0.23□□□□□ -2.45
FOXA1P55317 RNU7-165P-201ENST00000458864 60 ntBASIC-0.23□□□□□ -2.45
FOXA1P55317 RNU7-161P-201ENST00000517289 62 ntBASIC-0.23□□□□□ -2.45
FOXA1P55317 AC138749.4-201ENST00000563970 127 ntBASIC-0.23□□□□□ -2.45
FOXA1P55317 MIR378D2-201ENST00000580636 98 ntBASIC-0.23□□□□□ -2.45
FOXA1P55317 MIR4493-201ENST00000584016 73 ntBASIC-0.23□□□□□ -2.45
FOXA1P55317 MIR548AD-201ENST00000584780 82 ntBASIC-0.23□□□□□ -2.45
FOXA1P55317 AP001180.6-201ENST00000584918 159 ntBASIC-0.23□□□□□ -2.45
FOXA1P55317 RNU6-103P-201ENST00000363686 107 ntBASIC-0.24□□□□□ -2.45
FOXA1P55317 Y_RNA.366-201ENST00000365540 102 ntBASIC-0.24□□□□□ -2.45
FOXA1P55317 SNORA32-201ENST00000384072 121 ntBASIC-0.24□□□□□ -2.45
FOXA1P55317 RNY1P6-201ENST00000384193 109 ntBASIC-0.24□□□□□ -2.45
FOXA1P55317 Y_RNA.460-201ENST00000384255 102 ntBASIC-0.24□□□□□ -2.45
FOXA1P55317 RNA5SP144-201ENST00000410846 116 ntBASIC-0.24□□□□□ -2.45
FOXA1P55317 RNU7-113P-201ENST00000459273 62 ntBASIC-0.24□□□□□ -2.45
FOXA1P55317 RNU7-104P-201ENST00000459398 79 ntBASIC-0.24□□□□□ -2.45
FOXA1P55317 MIR5706-201ENST00000579841 80 ntBASIC-0.24□□□□□ -2.45
FOXA1P55317 MIR3171-201ENST00000584270 74 ntBASIC-0.24□□□□□ -2.45
FOXA1P55317 U7.6-201ENST00000610841 64 ntBASIC-0.24□□□□□ -2.45
FOXA1P55317 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-0.24□□□□□ -2.45
FOXA1P55317 Y_RNA.119-201ENST00000363301 96 ntBASIC-0.25□□□□□ -2.45
FOXA1P55317 RNA5SP33-201ENST00000516687 98 ntBASIC-0.25□□□□□ -2.45
FOXA1P55317 MIR4744-201ENST00000581563 82 ntBASIC-0.25□□□□□ -2.45
FOXA1P55317 MIR4645-201ENST00000583158 77 ntBASIC-0.25□□□□□ -2.45
FOXA1P55317 Y_RNA.262-201ENST00000364641 102 ntBASIC-0.26□□□□□ -2.45
FOXA1P55317 RNY1P2-201ENST00000364820 117 ntBASIC-0.26□□□□□ -2.45
FOXA1P55317 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.26□□□□□ -2.45
FOXA1P55317 SNORD67.1-201ENST00000516618 108 ntBASIC-0.26□□□□□ -2.45
FOXA1P55317 RNU7-137P-201ENST00000516788 62 ntBASIC-0.26□□□□□ -2.45
FOXA1P55317 AC020661.2-201ENST00000560114 134 ntBASIC-0.26□□□□□ -2.45
FOXA1P55317 MIR4677-201ENST00000584153 80 ntBASIC-0.26□□□□□ -2.45
FOXA1P55317 AC006504.6-201ENST00000590142 199 ntBASIC-0.26□□□□□ -2.45
FOXA1P55317 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-0.26□□□□□ -2.45
FOXA1P55317 MIR335-201ENST00000362173 94 ntBASIC-0.27□□□□□ -2.45
FOXA1P55317 SNORD115-2-201ENST00000362842 82 ntBASIC-0.27□□□□□ -2.45
FOXA1P55317 Y_RNA.120-201ENST00000363304 110 ntBASIC-0.27□□□□□ -2.45
FOXA1P55317 RNA5SP403-201ENST00000363598 108 ntBASIC-0.27□□□□□ -2.45
FOXA1P55317 SNORD115-20-201ENST00000365099 82 ntBASIC-0.27□□□□□ -2.45
FOXA1P55317 Y_RNA.512-201ENST00000384518 102 ntBASIC-0.27□□□□□ -2.45
FOXA1P55317 RNU6-1109P-201ENST00000391187 107 ntBASIC-0.27□□□□□ -2.45
FOXA1P55317 RNU6-985P-201ENST00000410182 104 ntBASIC-0.27□□□□□ -2.45
FOXA1P55317 MIR3925-201ENST00000584674 77 ntBASIC-0.27□□□□□ -2.45
FOXA1P55317 AL359881.1-201ENST00000602916 267 ntBASIC-0.27□□□□□ -2.45
FOXA1P55317 AC098479.1-201ENST00000609225 154 ntBASIC-0.27□□□□□ -2.45
FOXA1P55317 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.27□□□□□ -2.45
FOXA1P55317 RNA5SP98-201ENST00000363158 137 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 SNORD114-12-201ENST00000365400 75 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 RNU6-713P-201ENST00000384761 107 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 RNU6-578P-201ENST00000390980 103 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 SNORD41.1-201ENST00000391000 69 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 Z95118.1-201ENST00000421372 247 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 RNU6-180P-201ENST00000516697 61 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 RNU2-60P-201ENST00000517290 128 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 MIR548H5-201ENST00000580314 60 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 MIR548AE2-201ENST00000583456 67 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 uc_338.28-201ENST00000612082 187 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 AC105081.1-201ENST00000617727 106 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-0.28□□□□□ -2.45
FOXA1P55317 AC073869.9-201ENST00000641610 120 ntBASIC-0.28□□□□□ -2.45
FOXA1P55317 MIR101-1-201ENST00000362265 75 ntBASIC-0.29□□□□□ -2.46
FOXA1P55317 SNORD114-10-201ENST00000363409 72 ntBASIC-0.29□□□□□ -2.46
FOXA1P55317 RNA5SP25-201ENST00000410815 110 ntBASIC-0.29□□□□□ -2.46
FOXA1P55317 MTATP6P23-201ENST00000440153 476 ntBASIC-0.29□□□□□ -2.46
FOXA1P55317 SNORD4A-201ENST00000459174 72 ntBASIC-0.29□□□□□ -2.46
FOXA1P55317 MIR4643-201ENST00000577473 78 ntBASIC-0.29□□□□□ -2.46
FOXA1P55317 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-0.29□□□□□ -2.46
FOXA1P55317 AC011921.3-201ENST00000605540 361 ntBASIC-0.29□□□□□ -2.46
FOXA1P55317 SNORD114-28-201ENST00000363610 72 ntBASIC-0.3□□□□□ -2.46
FOXA1P55317 Y_RNA.202-201ENST00000364083 110 ntBASIC-0.3□□□□□ -2.46
FOXA1P55317 Y_RNA.483-201ENST00000384380 101 ntBASIC-0.3□□□□□ -2.46
FOXA1P55317 RNU6-429P-201ENST00000384582 108 ntBASIC-0.3□□□□□ -2.46
FOXA1P55317 Y_RNA.535-201ENST00000384612 99 ntBASIC-0.3□□□□□ -2.46
FOXA1P55317 MT-TW-201ENST00000387382 68 ntBASIC-0.3□□□□□ -2.46
FOXA1P55317 HMGN2P22-201ENST00000427588 175 ntBASIC-0.3□□□□□ -2.46
FOXA1P55317 RNY3P16-201ENST00000516338 101 ntBASIC-0.3□□□□□ -2.46
FOXA1P55317 RNU2-4P-201ENST00000606190 192 ntBASIC-0.3□□□□□ -2.46
FOXA1P55317 MIR6514-201ENST00000622549 70 ntBASIC-0.3□□□□□ -2.46
FOXA1P55317 Y_RNA.76-201ENST00000362931 109 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 SNORA18.1-201ENST00000363418 128 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 SNORA25.7-201ENST00000364375 127 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 SNORA33.2-201ENST00000365413 134 ntBASIC-0.31□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 174.9 ms