Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.71□□□□□ -2.3
NKX2-1P43699 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.71□□□□□ -2.3
NKX2-1P43699 SNORD83.1-201ENST00000411362 77 ntBASIC0.71□□□□□ -2.3
NKX2-1P43699 RNY4P20-201ENST00000516678 93 ntBASIC0.71□□□□□ -2.3
NKX2-1P43699 MIR548AE2-201ENST00000583456 67 ntBASIC0.71□□□□□ -2.3
NKX2-1P43699 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
NKX2-1P43699 Y_RNA.226-201ENST00000364337 114 ntBASIC0.7□□□□□ -2.3
NKX2-1P43699 MIR100-201ENST00000385259 80 ntBASIC0.7□□□□□ -2.3
NKX2-1P43699 Y_RNA.588-201ENST00000391254 102 ntBASIC0.7□□□□□ -2.3
NKX2-1P43699 MIR1270-201ENST00000459320 83 ntBASIC0.7□□□□□ -2.3
NKX2-1P43699 RNU6-977P-201ENST00000516411 103 ntBASIC0.7□□□□□ -2.3
NKX2-1P43699 Y_RNA.712-201ENST00000517011 92 ntBASIC0.7□□□□□ -2.3
NKX2-1P43699 MIR4771-2-201ENST00000577758 74 ntBASIC0.7□□□□□ -2.3
NKX2-1P43699 MIR4771-1-201ENST00000582617 74 ntBASIC0.7□□□□□ -2.3
NKX2-1P43699 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
NKX2-1P43699 HSBP1P2-201ENST00000299671 229 ntBASIC0.69□□□□□ -2.3
NKX2-1P43699 RNU6-1104P-201ENST00000384723 104 ntBASIC0.69□□□□□ -2.3
NKX2-1P43699 MIR532-201ENST00000385025 91 ntBASIC0.69□□□□□ -2.3
NKX2-1P43699 MIR146A-201ENST00000385201 99 ntBASIC0.69□□□□□ -2.3
NKX2-1P43699 MIR1257-201ENST00000408490 117 ntBASIC0.69□□□□□ -2.3
NKX2-1P43699 SNORD100-201ENST00000408573 76 ntBASIC0.69□□□□□ -2.3
NKX2-1P43699 PSMC1P5-201ENST00000512850 177 ntBASIC0.69□□□□□ -2.3
NKX2-1P43699 AP003327.1-201ENST00000529684 127 ntBASIC0.69□□□□□ -2.3
NKX2-1P43699 AC090897.1-201ENST00000580909 226 ntBASIC0.69□□□□□ -2.3
NKX2-1P43699 MIR6857-201ENST00000613267 93 ntBASIC0.69□□□□□ -2.3
NKX2-1P43699 MIR8066-201ENST00000617280 78 ntBASIC0.69□□□□□ -2.3
NKX2-1P43699 AC023934.1-201ENST00000574529 2389 ntBASIC0.69□□□□□ -2.3
NKX2-1P43699 Y_RNA.42-201ENST00000362660 108 ntBASIC0.68□□□□□ -2.3
NKX2-1P43699 Y_RNA.191-201ENST00000363972 113 ntBASIC0.68□□□□□ -2.3
NKX2-1P43699 SNORD58C-201ENST00000365223 64 ntBASIC0.68□□□□□ -2.3
NKX2-1P43699 RNU4-45P-201ENST00000365469 141 ntBASIC0.68□□□□□ -2.3
NKX2-1P43699 SNORD99-201ENST00000408612 74 ntBASIC0.68□□□□□ -2.3
NKX2-1P43699 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.68□□□□□ -2.3
NKX2-1P43699 RNU6-351P-201ENST00000516097 100 ntBASIC0.68□□□□□ -2.3
NKX2-1P43699 RNU7-137P-201ENST00000516788 62 ntBASIC0.68□□□□□ -2.3
NKX2-1P43699 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.68□□□□□ -2.3
NKX2-1P43699 MIR3163-201ENST00000581592 73 ntBASIC0.68□□□□□ -2.3
NKX2-1P43699 Y_RNA.116-201ENST00000363292 103 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 RNY1P2-201ENST00000364820 117 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 Y_RNA.294-201ENST00000364916 102 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 Y_RNA.346-201ENST00000365385 112 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 RNU6-1335P-201ENST00000365426 107 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 Y_RNA.563-201ENST00000384707 108 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 RNU6-1237P-201ENST00000384777 107 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 AL603908.1-201ENST00000406098 201 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 SNORD93-201ENST00000408813 74 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 RNA5SP272-201ENST00000516095 111 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 RNU7-156P-201ENST00000517214 74 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 MIR4491-201ENST00000581087 68 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 FAM71BP1-201ENST00000604431 523 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 AC087741.2-201ENST00000619415 172 ntBASIC0.67□□□□□ -2.3
NKX2-1P43699 Y_RNA.213-201ENST00000364178 111 ntBASIC0.66□□□□□ -2.3
NKX2-1P43699 MIR573-201ENST00000384964 99 ntBASIC0.66□□□□□ -2.3
NKX2-1P43699 MIR759-201ENST00000390224 91 ntBASIC0.66□□□□□ -2.3
NKX2-1P43699 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
NKX2-1P43699 SNORD77B-201ENST00000391112 67 ntBASIC0.66□□□□□ -2.3
NKX2-1P43699 RNU1-119P-201ENST00000391122 165 ntBASIC0.66□□□□□ -2.3
NKX2-1P43699 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.66□□□□□ -2.3
NKX2-1P43699 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.66□□□□□ -2.3
NKX2-1P43699 AL606490.4-201ENST00000423117 127 ntBASIC0.66□□□□□ -2.3
NKX2-1P43699 AC244098.3-201ENST00000424803 96 ntBASIC0.66□□□□□ -2.3
NKX2-1P43699 MIR6504-201ENST00000613520 61 ntBASIC0.66□□□□□ -2.3
NKX2-1P43699 MIR6082-201ENST00000613604 109 ntBASIC0.66□□□□□ -2.3
NKX2-1P43699 MIR8070-201ENST00000616510 88 ntBASIC0.66□□□□□ -2.3
NKX2-1P43699 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.66□□□□□ -2.3
NKX2-1P43699 RNY4P6-201ENST00000363667 96 ntBASIC0.65□□□□□ -2.31
NKX2-1P43699 SNORD113-1-201ENST00000365321 69 ntBASIC0.65□□□□□ -2.31
NKX2-1P43699 MIR520F-201ENST00000384824 87 ntBASIC0.65□□□□□ -2.31
NKX2-1P43699 MT-TI-201ENST00000387365 69 ntBASIC0.65□□□□□ -2.31
NKX2-1P43699 RNU6-659P-201ENST00000516454 104 ntBASIC0.65□□□□□ -2.31
NKX2-1P43699 MIR4679-2-201ENST00000578358 77 ntBASIC0.65□□□□□ -2.31
NKX2-1P43699 AL359881.1-201ENST00000602916 267 ntBASIC0.65□□□□□ -2.31
NKX2-1P43699 AC025166.1-201ENST00000612411 163 ntBASIC0.65□□□□□ -2.31
NKX2-1P43699 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.65□□□□□ -2.31
NKX2-1P43699 MIR6866-201ENST00000638146 69 ntBASIC0.65□□□□□ -2.31
NKX2-1P43699 Y_RNA.36-201ENST00000362602 112 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 RNU6-187P-201ENST00000384139 106 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 RNU6-364P-201ENST00000384387 107 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 Y_RNA.528-201ENST00000384575 108 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 RNU6-959P-201ENST00000384671 107 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 RNU4-83P-201ENST00000410863 133 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 TMSB4XP3-201ENST00000445144 114 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 RNU7-102P-201ENST00000458948 62 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 RNU6-781P-201ENST00000516377 101 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 SNORD67.1-201ENST00000516618 108 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 RNU6-448P-201ENST00000517052 107 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 AC022523.2-201ENST00000561045 150 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 MIR4698-201ENST00000577795 80 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 MIR3914-2-201ENST00000637339 95 ntBASIC0.64□□□□□ -2.31
NKX2-1P43699 RNU6-774P-201ENST00000363238 107 ntBASIC0.63□□□□□ -2.31
NKX2-1P43699 Y_RNA.218-201ENST00000364218 104 ntBASIC0.63□□□□□ -2.31
NKX2-1P43699 SNORD115-35-201ENST00000365122 82 ntBASIC0.63□□□□□ -2.31
NKX2-1P43699 MIR605-201ENST00000385078 83 ntBASIC0.63□□□□□ -2.31
NKX2-1P43699 SUMO1P3-201ENST00000439961 304 ntBASIC0.63□□□□□ -2.31
NKX2-1P43699 RNU6-1211P-201ENST00000459179 105 ntBASIC0.63□□□□□ -2.31
NKX2-1P43699 AC002350.1-201ENST00000490759 375 ntBASIC0.63□□□□□ -2.31
NKX2-1P43699 RNU5E-3P-201ENST00000515913 68 ntBASIC0.63□□□□□ -2.31
NKX2-1P43699 RNA5SP102-201ENST00000516865 106 ntBASIC0.63□□□□□ -2.31
NKX2-1P43699 RNU6-1234P-201ENST00000516877 103 ntBASIC0.63□□□□□ -2.31
NKX2-1P43699 RNU6-971P-201ENST00000516920 106 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 171.7 ms