Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 Y_RNA.797-201ENST00000515977 94 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 RNA5SP33-201ENST00000516687 98 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 AC141846.1-201ENST00000568348 142 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 Y_RNA.757-201ENST00000578934 114 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 MIR101-2-201ENST00000362195 79 ntBASIC0.05□□□□□ -2.4
SCN1AP35498 SNORD114-10-201ENST00000363409 72 ntBASIC0.05□□□□□ -2.4
SCN1AP35498 snoU2_19.4-201ENST00000364329 80 ntBASIC0.05□□□□□ -2.4
SCN1AP35498 Y_RNA.531-201ENST00000384589 121 ntBASIC0.05□□□□□ -2.4
SCN1AP35498 RNU6-768P-201ENST00000384683 107 ntBASIC0.05□□□□□ -2.4
SCN1AP35498 MIR3678-201ENST00000578455 94 ntBASIC0.05□□□□□ -2.4
SCN1AP35498 AC073869.9-201ENST00000641610 120 ntBASIC0.05□□□□□ -2.4
SCN1AP35498 Y_RNA.433-201ENST00000384089 102 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 MIR644A-201ENST00000385262 94 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 MIR548F4-201ENST00000408515 105 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 DEFB131E-201ENST00000532329 154 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 AC141557.1-201ENST00000540982 400 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 Y_RNA.52-201ENST00000362760 96 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 Y_RNA.75-201ENST00000362927 97 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 MIR610-201ENST00000385139 96 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 MIR548H3-201ENST00000408771 118 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 MTCYBP9-201ENST00000431021 303 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 RNU7-159P-201ENST00000459284 62 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 Y_RNA.660-201ENST00000516002 120 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 SNORA25.16-201ENST00000516741 121 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 AL117187.1-201ENST00000555482 181 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.04□□□□□ -2.4
SCN1AP35498 SNORA36.1-201ENST00000363424 132 ntBASIC0.03□□□□□ -2.4
SCN1AP35498 SNORD58.1-201ENST00000391313 66 ntBASIC0.03□□□□□ -2.4
SCN1AP35498 MIR548H2-201ENST00000408874 88 ntBASIC0.03□□□□□ -2.4
SCN1AP35498 MTND1P19-201ENST00000511780 315 ntBASIC0.03□□□□□ -2.4
SCN1AP35498 RNU7-161P-201ENST00000517289 62 ntBASIC0.03□□□□□ -2.4
SCN1AP35498 SNORD114-16-201ENST00000363044 70 ntBASIC0.03□□□□□ -2.41
SCN1AP35498 Y_RNA.416-201ENST00000384014 113 ntBASIC0.03□□□□□ -2.41
SCN1AP35498 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.03□□□□□ -2.41
SCN1AP35498 AL121914.1-201ENST00000450188 156 ntBASIC0.03□□□□□ -2.41
SCN1AP35498 MIR376A2-201ENST00000636782 80 ntBASIC0.03□□□□□ -2.41
SCN1AP35498 Y_RNA.121-201ENST00000363309 113 ntBASIC0.02□□□□□ -2.41
SCN1AP35498 Y_RNA.193-201ENST00000363979 102 ntBASIC0.02□□□□□ -2.41
SCN1AP35498 RNU6-1336P-201ENST00000383886 109 ntBASIC0.02□□□□□ -2.41
SCN1AP35498 Y_RNA.518-201ENST00000384552 113 ntBASIC0.02□□□□□ -2.41
SCN1AP35498 RNA5SP144-201ENST00000410846 116 ntBASIC0.02□□□□□ -2.41
SCN1AP35498 Y_RNA.626-201ENST00000411288 95 ntBASIC0.02□□□□□ -2.41
SCN1AP35498 MIR1270-201ENST00000459320 83 ntBASIC0.02□□□□□ -2.41
SCN1AP35498 SCARNA15-202ENST00000516881 127 ntBASIC0.02□□□□□ -2.41
SCN1AP35498 MIR5190-201ENST00000581537 80 ntBASIC0.02□□□□□ -2.41
SCN1AP35498 Y_RNA.366-201ENST00000365540 102 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 RNU6-429P-201ENST00000384582 108 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 MIR206-201ENST00000384872 86 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 MIR4290-201ENST00000583807 95 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 AC105081.1-201ENST00000617727 106 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 AL365265.1-201ENST00000621045 234 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 U6.106-201ENST00000636360 105 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 AC091304.10-201ENST00000641554 121 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 MIR411-201ENST00000362239 96 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 SNORD114-5-201ENST00000362928 70 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 RNY4P28-201ENST00000365281 93 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 RNU6-449P-201ENST00000383914 107 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 RNU4-83P-201ENST00000410863 133 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 RNU6-848P-201ENST00000515948 107 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 RNU6-617P-201ENST00000516147 107 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 RNU6-473P-201ENST00000516164 107 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 RNU6-1049P-201ENST00000516414 107 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 RNU2-35P-201ENST00000516446 142 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 RNU6-531P-201ENST00000516694 104 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 RNU6-1149P-201ENST00000516810 97 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 MIR6844-201ENST00000637122 62 ntBASIC0.01□□□□□ -2.41
SCN1AP35498 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0□□□□□ -2.41
SCN1AP35498 SNORA22.1-201ENST00000362701 134 ntBASIC0□□□□□ -2.41
SCN1AP35498 Y_RNA.171-201ENST00000363760 102 ntBASIC0□□□□□ -2.41
SCN1AP35498 MIR635-201ENST00000384830 98 ntBASIC0□□□□□ -2.41
SCN1AP35498 RNU7-129P-201ENST00000516128 62 ntBASIC0□□□□□ -2.41
SCN1AP35498 RNU6-1045P-201ENST00000516321 107 ntBASIC0□□□□□ -2.41
SCN1AP35498 RNA5SP268-201ENST00000516828 124 ntBASIC0□□□□□ -2.41
SCN1AP35498 RNU6-782P-201ENST00000516852 104 ntBASIC0□□□□□ -2.41
SCN1AP35498 Y_RNA.812-201ENST00000610788 101 ntBASIC0□□□□□ -2.41
SCN1AP35498 Y_RNA.784-201ENST00000613803 101 ntBASIC0□□□□□ -2.41
SCN1AP35498 Y_RNA.787-201ENST00000616522 101 ntBASIC0□□□□□ -2.41
SCN1AP35498 Y_RNA.780-201ENST00000617336 101 ntBASIC0□□□□□ -2.41
SCN1AP35498 Y_RNA.801-201ENST00000619005 101 ntBASIC0□□□□□ -2.41
SCN1AP35498 MIR6841-201ENST00000637129 72 ntBASIC0□□□□□ -2.41
SCN1AP35498 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-0.01□□□□□ -2.41
SCN1AP35498 Y_RNA.680-201ENST00000516441 93 ntBASIC-0.01□□□□□ -2.41
SCN1AP35498 RNA5SP285-201ENST00000516619 119 ntBASIC-0.01□□□□□ -2.41
SCN1AP35498 AC062037.2-201ENST00000610137 73 ntBASIC-0.01□□□□□ -2.41
SCN1AP35498 RNA5SP47-201ENST00000517230 109 ntBASIC-0.01□□□□□ -2.41
SCN1AP35498 MRPS18CP4-201ENST00000535821 231 ntBASIC-0.01□□□□□ -2.41
SCN1AP35498 MIR5706-201ENST00000579841 80 ntBASIC-0.01□□□□□ -2.41
SCN1AP35498 MIR4636-201ENST00000582271 80 ntBASIC-0.01□□□□□ -2.41
SCN1AP35498 MIR7107-201ENST00000611489 80 ntBASIC-0.01□□□□□ -2.41
SCN1AP35498 SNORA63.5-201ENST00000363548 123 ntBASIC-0.02□□□□□ -2.41
SCN1AP35498 Y_RNA.182-201ENST00000363880 111 ntBASIC-0.02□□□□□ -2.41
SCN1AP35498 RNU7-123P-201ENST00000515911 60 ntBASIC-0.02□□□□□ -2.41
SCN1AP35498 RNU2-60P-201ENST00000517290 128 ntBASIC-0.02□□□□□ -2.41
SCN1AP35498 IGKV1-22-201ENST00000524313 326 ntBASIC-0.02□□□□□ -2.41
SCN1AP35498 MIR3646-201ENST00000578301 84 ntBASIC-0.02□□□□□ -2.41
SCN1AP35498 MIR4308-201ENST00000580634 81 ntBASIC-0.02□□□□□ -2.41
SCN1AP35498 SNORD18B-201ENST00000365659 72 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 Y_RNA.584-201ENST00000391090 114 ntBASIC-0.03□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 180.9 ms