Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.7□□□□□ -2.14
ERCC3P19447 AC133485.1-201ENST00000567176 124 ntBASIC1.7□□□□□ -2.14
ERCC3P19447 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.7□□□□□ -2.14
ERCC3P19447 Y_RNA.773-201ENST00000607168 90 ntBASIC1.7□□□□□ -2.14
ERCC3P19447 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.7□□□□□ -2.14
ERCC3P19447 Y_RNA.549-201ENST00000384657 102 ntBASIC1.69□□□□□ -2.14
ERCC3P19447 MIR942-201ENST00000401111 86 ntBASIC1.69□□□□□ -2.14
ERCC3P19447 RPS29P28-201ENST00000446439 141 ntBASIC1.69□□□□□ -2.14
ERCC3P19447 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.69□□□□□ -2.14
ERCC3P19447 AL157834.3-201ENST00000615543 103 ntBASIC1.69□□□□□ -2.14
ERCC3P19447 MIR1255B1-201ENST00000636325 63 ntBASIC1.69□□□□□ -2.14
ERCC3P19447 MIR1-1-201ENST00000362147 71 ntBASIC1.68□□□□□ -2.14
ERCC3P19447 RNU6-834P-201ENST00000362367 110 ntBASIC1.68□□□□□ -2.14
ERCC3P19447 Y_RNA.155-201ENST00000363632 101 ntBASIC1.68□□□□□ -2.14
ERCC3P19447 Y_RNA.507-201ENST00000384500 99 ntBASIC1.68□□□□□ -2.14
ERCC3P19447 MIR1304-201ENST00000408243 91 ntBASIC1.68□□□□□ -2.14
ERCC3P19447 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.68□□□□□ -2.14
ERCC3P19447 SNORA7.5-201ENST00000410672 110 ntBASIC1.68□□□□□ -2.14
ERCC3P19447 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.68□□□□□ -2.14
ERCC3P19447 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
ERCC3P19447 RNU6-403P-201ENST00000363163 104 ntBASIC1.67□□□□□ -2.14
ERCC3P19447 Y_RNA.355-201ENST00000365462 98 ntBASIC1.67□□□□□ -2.14
ERCC3P19447 Y_RNA.508-201ENST00000384502 114 ntBASIC1.67□□□□□ -2.14
ERCC3P19447 RNU6-939P-201ENST00000384634 107 ntBASIC1.67□□□□□ -2.14
ERCC3P19447 MIR1276-201ENST00000408707 83 ntBASIC1.67□□□□□ -2.14
ERCC3P19447 AL035470.1-201ENST00000622571 220 ntBASIC1.67□□□□□ -2.14
ERCC3P19447 RNU6-1325P-201ENST00000364905 105 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 Y_RNA.448-201ENST00000384185 108 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 SNORA72.6-201ENST00000384520 129 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 MIR206-201ENST00000384872 86 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 RNU6-816P-201ENST00000390914 107 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 U8.15-201ENST00000390947 134 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 RNU6-1268P-201ENST00000391214 107 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 RNU6-1239P-201ENST00000391310 107 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 RNU7-185P-201ENST00000459215 60 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 AC023790.1-201ENST00000482174 347 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 RNU6-977P-201ENST00000516411 103 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 RNU6-412P-201ENST00000516434 106 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 RNU7-137P-201ENST00000516788 62 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 DEFB131E-201ENST00000532329 154 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 AL353770.2-201ENST00000620024 78 ntBASIC1.66□□□□□ -2.14
ERCC3P19447 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.65□□□□□ -2.15
ERCC3P19447 SNORD114-10-201ENST00000363409 72 ntBASIC1.65□□□□□ -2.15
ERCC3P19447 MIR320A-201ENST00000385302 82 ntBASIC1.65□□□□□ -2.15
ERCC3P19447 RPS26P5-201ENST00000418544 335 ntBASIC1.65□□□□□ -2.15
ERCC3P19447 SNORD124-201ENST00000459577 104 ntBASIC1.65□□□□□ -2.15
ERCC3P19447 RNU7-2P-201ENST00000516096 62 ntBASIC1.65□□□□□ -2.15
ERCC3P19447 RNU6-521P-201ENST00000516663 105 ntBASIC1.65□□□□□ -2.15
ERCC3P19447 SNORD115-19-201ENST00000363098 82 ntBASIC1.64□□□□□ -2.15
ERCC3P19447 SNORD115-18-201ENST00000363293 82 ntBASIC1.64□□□□□ -2.15
ERCC3P19447 RNU4-67P-201ENST00000364569 141 ntBASIC1.64□□□□□ -2.15
ERCC3P19447 SNORD115-17-201ENST00000364612 82 ntBASIC1.64□□□□□ -2.15
ERCC3P19447 RNU6-865P-201ENST00000364772 107 ntBASIC1.64□□□□□ -2.15
ERCC3P19447 RNU6-429P-201ENST00000384582 108 ntBASIC1.64□□□□□ -2.15
ERCC3P19447 SNORD89-201ENST00000390981 114 ntBASIC1.64□□□□□ -2.15
ERCC3P19447 RNA5SP404-201ENST00000517118 132 ntBASIC1.64□□□□□ -2.15
ERCC3P19447 MIR7974-201ENST00000615835 79 ntBASIC1.64□□□□□ -2.15
ERCC3P19447 Y_RNA.116-201ENST00000363292 103 ntBASIC1.63□□□□□ -2.15
ERCC3P19447 Y_RNA.118-201ENST00000363300 101 ntBASIC1.63□□□□□ -2.15
ERCC3P19447 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.63□□□□□ -2.15
ERCC3P19447 AL512310.12-203ENST00000640543 90 ntBASIC1.63□□□□□ -2.15
ERCC3P19447 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
ERCC3P19447 Y_RNA.49-201ENST00000362714 112 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 Y_RNA.309-201ENST00000365046 111 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 RNU1-36P-201ENST00000365130 165 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 RNU6-53P-201ENST00000365367 106 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 RNU6-409P-201ENST00000384114 104 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 RNU6-364P-201ENST00000384387 107 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 MIR518E-201ENST00000385252 88 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 RNU4-83P-201ENST00000410863 133 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 FABP5P4-201ENST00000437203 171 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 RNU1-123P-201ENST00000458950 160 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.62□□□□□ -2.15
ERCC3P19447 MIR6504-201ENST00000613520 61 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 AL162726.3-218ENST00000636401 95 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 U6.109-201ENST00000636749 87 ntBASIC1.62□□□□□ -2.15
ERCC3P19447 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.62□□□□□ -2.15
ERCC3P19447 Y_RNA.224-201ENST00000364308 111 ntBASIC1.61□□□□□ -2.15
ERCC3P19447 SNORD115-35-201ENST00000365122 82 ntBASIC1.61□□□□□ -2.15
ERCC3P19447 SNORD20-201ENST00000384550 80 ntBASIC1.61□□□□□ -2.15
ERCC3P19447 MIR618-201ENST00000385287 98 ntBASIC1.61□□□□□ -2.15
ERCC3P19447 RNU6-1321P-201ENST00000390905 107 ntBASIC1.61□□□□□ -2.15
ERCC3P19447 MIR1912-201ENST00000410389 80 ntBASIC1.61□□□□□ -2.15
ERCC3P19447 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.61□□□□□ -2.15
ERCC3P19447 RPL39P34-201ENST00000477141 156 ntBASIC1.61□□□□□ -2.15
ERCC3P19447 MIR4679-2-201ENST00000578358 77 ntBASIC1.61□□□□□ -2.15
ERCC3P19447 MIR4676-201ENST00000583078 72 ntBASIC1.61□□□□□ -2.15
ERCC3P19447 AC020891.4-201ENST00000605745 93 ntBASIC1.61□□□□□ -2.15
ERCC3P19447 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.61□□□□□ -2.15
ERCC3P19447 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
ERCC3P19447 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.6□□□□□ -2.15
ERCC3P19447 RNA5SP133-201ENST00000363368 119 ntBASIC1.6□□□□□ -2.15
ERCC3P19447 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
ERCC3P19447 MIR520F-201ENST00000384824 87 ntBASIC1.6□□□□□ -2.15
ERCC3P19447 RNA5SP61-201ENST00000516453 100 ntBASIC1.6□□□□□ -2.15
ERCC3P19447 MIR19B1-201ENST00000384829 87 ntBASIC1.59□□□□□ -2.15
ERCC3P19447 MIR200A-201ENST00000384875 90 ntBASIC1.59□□□□□ -2.15
ERCC3P19447 RNU6-733P-201ENST00000410759 104 ntBASIC1.59□□□□□ -2.15
ERCC3P19447 RNU7-48P-201ENST00000458875 63 ntBASIC1.59□□□□□ -2.15
ERCC3P19447 RNA5SP102-201ENST00000516865 106 ntBASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 268.6 ms