Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SNORA18-201ENST00000384416 132 ntBASIC0.38□□□□□ -2.35
VPS28Q9UK41 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.38□□□□□ -2.35
VPS28Q9UK41 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.38□□□□□ -2.35
VPS28Q9UK41 MIR6082-201ENST00000613604 109 ntBASIC0.38□□□□□ -2.35
VPS28Q9UK41 Y_RNA.13-201ENST00000362403 112 ntBASIC0.37□□□□□ -2.35
VPS28Q9UK41 Y_RNA.162-201ENST00000363683 102 ntBASIC0.37□□□□□ -2.35
VPS28Q9UK41 VTRNA1-3-201ENST00000365645 89 ntBASIC0.37□□□□□ -2.35
VPS28Q9UK41 RNY1P6-201ENST00000384193 109 ntBASIC0.37□□□□□ -2.35
VPS28Q9UK41 RNY1P4-201ENST00000384595 115 ntBASIC0.37□□□□□ -2.35
VPS28Q9UK41 AL118496.2-201ENST00000448300 230 ntBASIC0.37□□□□□ -2.35
VPS28Q9UK41 RNU6-765P-201ENST00000516916 99 ntBASIC0.37□□□□□ -2.35
VPS28Q9UK41 AC133485.4-201ENST00000561835 220 ntBASIC0.37□□□□□ -2.35
VPS28Q9UK41 MIR3128-201ENST00000581957 66 ntBASIC0.37□□□□□ -2.35
VPS28Q9UK41 Y_RNA.75-201ENST00000362927 97 ntBASIC0.36□□□□□ -2.35
VPS28Q9UK41 Y_RNA.412-201ENST00000384001 104 ntBASIC0.36□□□□□ -2.35
VPS28Q9UK41 Y_RNA.521-201ENST00000384560 114 ntBASIC0.36□□□□□ -2.35
VPS28Q9UK41 Y_RNA.567-201ENST00000384736 106 ntBASIC0.36□□□□□ -2.35
VPS28Q9UK41 Y_RNA.588-201ENST00000391254 102 ntBASIC0.36□□□□□ -2.35
VPS28Q9UK41 Y_RNA.617-201ENST00000410920 90 ntBASIC0.36□□□□□ -2.35
VPS28Q9UK41 RNU6-1023P-201ENST00000516137 106 ntBASIC0.36□□□□□ -2.35
VPS28Q9UK41 MRPS18CP4-201ENST00000535821 231 ntBASIC0.36□□□□□ -2.35
VPS28Q9UK41 U4.1-201ENST00000620349 87 ntBASIC0.36□□□□□ -2.35
VPS28Q9UK41 MTND5P32-201ENST00000560711 1802 ntBASIC0.36□□□□□ -2.35
VPS28Q9UK41 SNORA8.2-201ENST00000384372 139 ntBASIC0.35□□□□□ -2.35
VPS28Q9UK41 RNU6-1086P-201ENST00000410930 100 ntBASIC0.35□□□□□ -2.35
VPS28Q9UK41 SCARNA15.1-201ENST00000516384 125 ntBASIC0.35□□□□□ -2.35
VPS28Q9UK41 RNA5SP134-201ENST00000516492 96 ntBASIC0.35□□□□□ -2.35
VPS28Q9UK41 AC022523.2-201ENST00000561045 150 ntBASIC0.35□□□□□ -2.35
VPS28Q9UK41 MIR4491-201ENST00000581087 68 ntBASIC0.35□□□□□ -2.35
VPS28Q9UK41 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.35□□□□□ -2.35
VPS28Q9UK41 U6.106-201ENST00000636360 105 ntBASIC0.35□□□□□ -2.35
VPS28Q9UK41 Y_RNA.60-201ENST00000362831 98 ntBASIC0.34□□□□□ -2.36
VPS28Q9UK41 SNORA20.1-201ENST00000364790 130 ntBASIC0.34□□□□□ -2.36
VPS28Q9UK41 RNU6-1327P-201ENST00000365302 105 ntBASIC0.34□□□□□ -2.36
VPS28Q9UK41 SNORA72.6-201ENST00000384520 129 ntBASIC0.34□□□□□ -2.36
VPS28Q9UK41 Y_RNA.757-201ENST00000578934 114 ntBASIC0.34□□□□□ -2.36
VPS28Q9UK41 SNORA25.18-201ENST00000607153 114 ntBASIC0.34□□□□□ -2.36
VPS28Q9UK41 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.34□□□□□ -2.36
VPS28Q9UK41 Y_RNA.36-201ENST00000362602 112 ntBASIC0.33□□□□□ -2.36
VPS28Q9UK41 SNORD118-201ENST00000363593 134 ntBASIC0.33□□□□□ -2.36
VPS28Q9UK41 Y_RNA.174-201ENST00000363781 105 ntBASIC0.33□□□□□ -2.36
VPS28Q9UK41 AL512326.2-201ENST00000426359 151 ntBASIC0.33□□□□□ -2.36
VPS28Q9UK41 MIR4431-201ENST00000579990 94 ntBASIC0.33□□□□□ -2.36
VPS28Q9UK41 RNU6-702P-201ENST00000364982 107 ntBASIC0.32□□□□□ -2.36
VPS28Q9UK41 RNY1P13-201ENST00000365030 105 ntBASIC0.32□□□□□ -2.36
VPS28Q9UK41 Y_RNA.435-201ENST00000384095 112 ntBASIC0.32□□□□□ -2.36
VPS28Q9UK41 Y_RNA.540-201ENST00000384638 111 ntBASIC0.32□□□□□ -2.36
VPS28Q9UK41 AC096949.1-201ENST00000412047 152 ntBASIC0.32□□□□□ -2.36
VPS28Q9UK41 RNU6-135P-201ENST00000516769 101 ntBASIC0.32□□□□□ -2.36
VPS28Q9UK41 AC010487.4-201ENST00000637027 61 ntBASIC0.32□□□□□ -2.36
VPS28Q9UK41 Y_RNA.52-201ENST00000362760 96 ntBASIC0.31□□□□□ -2.36
VPS28Q9UK41 SNORD44.1-201ENST00000363202 61 ntBASIC0.31□□□□□ -2.36
VPS28Q9UK41 RNU6-918P-201ENST00000391219 106 ntBASIC0.31□□□□□ -2.36
VPS28Q9UK41 RNA5SP144-201ENST00000410846 116 ntBASIC0.31□□□□□ -2.36
VPS28Q9UK41 AL022718.1-201ENST00000412004 84 ntBASIC0.31□□□□□ -2.36
VPS28Q9UK41 RNA5SP480-201ENST00000516840 109 ntBASIC0.31□□□□□ -2.36
VPS28Q9UK41 RNU6-111P-201ENST00000517179 105 ntBASIC0.31□□□□□ -2.36
VPS28Q9UK41 MIR103A1-201ENST00000362165 78 ntBASIC0.3□□□□□ -2.36
VPS28Q9UK41 Y_RNA.171-201ENST00000363760 102 ntBASIC0.3□□□□□ -2.36
VPS28Q9UK41 Y_RNA.447-201ENST00000384184 113 ntBASIC0.3□□□□□ -2.36
VPS28Q9UK41 MIR644A-201ENST00000385262 94 ntBASIC0.3□□□□□ -2.36
VPS28Q9UK41 MTND3P2-201ENST00000438452 342 ntBASIC0.3□□□□□ -2.36
VPS28Q9UK41 SNRPGP12-201ENST00000449481 213 ntBASIC0.3□□□□□ -2.36
VPS28Q9UK41 RNU7-113P-201ENST00000459273 62 ntBASIC0.3□□□□□ -2.36
VPS28Q9UK41 RNU6-863P-201ENST00000515989 104 ntBASIC0.3□□□□□ -2.36
VPS28Q9UK41 Y_RNA.680-201ENST00000516441 93 ntBASIC0.3□□□□□ -2.36
VPS28Q9UK41 RNU6-1258P-201ENST00000516911 111 ntBASIC0.3□□□□□ -2.36
VPS28Q9UK41 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.3□□□□□ -2.36
VPS28Q9UK41 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
VPS28Q9UK41 MIR411-201ENST00000362239 96 ntBASIC0.29□□□□□ -2.36
VPS28Q9UK41 Y_RNA.32-201ENST00000362589 110 ntBASIC0.29□□□□□ -2.36
VPS28Q9UK41 RNU6-1099P-201ENST00000363533 107 ntBASIC0.29□□□□□ -2.36
VPS28Q9UK41 Y_RNA.193-201ENST00000363979 102 ntBASIC0.29□□□□□ -2.36
VPS28Q9UK41 Y_RNA.200-201ENST00000364018 102 ntBASIC0.29□□□□□ -2.36
VPS28Q9UK41 RNU6-1336P-201ENST00000383886 109 ntBASIC0.29□□□□□ -2.36
VPS28Q9UK41 RNU6-196P-201ENST00000384315 107 ntBASIC0.29□□□□□ -2.36
VPS28Q9UK41 MIR193B-201ENST00000384907 83 ntBASIC0.29□□□□□ -2.36
VPS28Q9UK41 AC108740.1-201ENST00000498629 225 ntBASIC0.29□□□□□ -2.36
VPS28Q9UK41 AC107027.2-201ENST00000512197 115 ntBASIC0.29□□□□□ -2.36
VPS28Q9UK41 Y_RNA.697-201ENST00000516776 113 ntBASIC0.29□□□□□ -2.36
VPS28Q9UK41 RNU6-349P-201ENST00000362402 107 ntBASIC0.28□□□□□ -2.36
VPS28Q9UK41 Y_RNA.83-201ENST00000363005 113 ntBASIC0.28□□□□□ -2.36
VPS28Q9UK41 SNORA36.1-201ENST00000363424 132 ntBASIC0.28□□□□□ -2.36
VPS28Q9UK41 SNORD114-26-201ENST00000363543 72 ntBASIC0.28□□□□□ -2.36
VPS28Q9UK41 Y_RNA.536-201ENST00000384621 113 ntBASIC0.28□□□□□ -2.36
VPS28Q9UK41 RNU7-79P-201ENST00000516082 62 ntBASIC0.28□□□□□ -2.36
VPS28Q9UK41 SNORA31.14-201ENST00000516728 116 ntBASIC0.28□□□□□ -2.36
VPS28Q9UK41 RNU7-35P-201ENST00000517174 62 ntBASIC0.28□□□□□ -2.36
VPS28Q9UK41 MIR4719-201ENST00000585233 84 ntBASIC0.28□□□□□ -2.36
VPS28Q9UK41 RNA5SP62-201ENST00000363457 110 ntBASIC0.27□□□□□ -2.37
VPS28Q9UK41 RNU6-1020P-201ENST00000363684 107 ntBASIC0.27□□□□□ -2.37
VPS28Q9UK41 RNU6-1229P-201ENST00000364295 107 ntBASIC0.27□□□□□ -2.37
VPS28Q9UK41 Y_RNA.307-201ENST00000365022 117 ntBASIC0.27□□□□□ -2.37
VPS28Q9UK41 RNU6-768P-201ENST00000384683 107 ntBASIC0.27□□□□□ -2.37
VPS28Q9UK41 SNORA25.16-201ENST00000516741 121 ntBASIC0.27□□□□□ -2.37
VPS28Q9UK41 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.27□□□□□ -2.37
VPS28Q9UK41 RNU6-312P-201ENST00000364629 107 ntBASIC0.26□□□□□ -2.37
VPS28Q9UK41 Y_RNA.337-201ENST00000365312 102 ntBASIC0.26□□□□□ -2.37
VPS28Q9UK41 Y_RNA.452-201ENST00000384202 108 ntBASIC0.26□□□□□ -2.37
VPS28Q9UK41 RNU6-291P-201ENST00000384720 107 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 171 ms