Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 RNU6-1187P-201ENST00000364771 110 ntBASIC0.88□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.366-201ENST00000365540 102 ntBASIC0.88□□□□□ -2.27
UPF3AQ9H1J1 RNY1P4-201ENST00000384595 115 ntBASIC0.88□□□□□ -2.27
UPF3AQ9H1J1 RPS3AP1-201ENST00000413190 320 ntBASIC0.88□□□□□ -2.27
UPF3AQ9H1J1 RNU7-90P-201ENST00000459216 62 ntBASIC0.88□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.703-201ENST00000516846 111 ntBASIC0.88□□□□□ -2.27
UPF3AQ9H1J1 RNU7-70P-201ENST00000516941 66 ntBASIC0.88□□□□□ -2.27
UPF3AQ9H1J1 AC013244.2-201ENST00000603396 103 ntBASIC0.88□□□□□ -2.27
UPF3AQ9H1J1 RNU6-94P-201ENST00000607728 107 ntBASIC0.88□□□□□ -2.27
UPF3AQ9H1J1 MIR6513-201ENST00000621188 64 ntBASIC0.88□□□□□ -2.27
UPF3AQ9H1J1 RNU6-369P-201ENST00000362515 102 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 SNORA22.1-201ENST00000362701 134 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.168-201ENST00000363740 102 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 RNU1-124P-201ENST00000363861 145 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 SNORD38B-201ENST00000384690 67 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 MIR563-201ENST00000385080 79 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 SNORD124-201ENST00000459577 104 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 RNU6-351P-201ENST00000516097 100 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 AP001328.1-201ENST00000528550 176 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 AC133485.1-201ENST00000567176 124 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 AC138907.6-201ENST00000568401 126 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 MIR4264-201ENST00000583520 66 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 AC011603.4-201ENST00000611325 277 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 AC106800.4-201ENST00000614905 153 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 SNORD38B-202ENST00000625943 69 ntBASIC0.87□□□□□ -2.27
UPF3AQ9H1J1 SNORD114-2-201ENST00000363953 78 ntBASIC0.86□□□□□ -2.27
UPF3AQ9H1J1 RNU6-690P-201ENST00000365242 106 ntBASIC0.86□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.470-201ENST00000384307 117 ntBASIC0.86□□□□□ -2.27
UPF3AQ9H1J1 SNORA2B-201ENST00000384583 137 ntBASIC0.86□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.586-201ENST00000391146 98 ntBASIC0.86□□□□□ -2.27
UPF3AQ9H1J1 AL512326.2-201ENST00000426359 151 ntBASIC0.86□□□□□ -2.27
UPF3AQ9H1J1 MTATP6P21-201ENST00000440681 189 ntBASIC0.86□□□□□ -2.27
UPF3AQ9H1J1 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.86□□□□□ -2.27
UPF3AQ9H1J1 snoU13.2-201ENST00000459201 104 ntBASIC0.86□□□□□ -2.27
UPF3AQ9H1J1 RPL39P28-201ENST00000465655 155 ntBASIC0.86□□□□□ -2.27
UPF3AQ9H1J1 MIR4661-201ENST00000582720 75 ntBASIC0.86□□□□□ -2.27
UPF3AQ9H1J1 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.86□□□□□ -2.27
UPF3AQ9H1J1 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.85□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.114-201ENST00000363265 113 ntBASIC0.85□□□□□ -2.27
UPF3AQ9H1J1 SNORD113.3-201ENST00000364630 78 ntBASIC0.85□□□□□ -2.27
UPF3AQ9H1J1 MIR588-201ENST00000384900 83 ntBASIC0.85□□□□□ -2.27
UPF3AQ9H1J1 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.85□□□□□ -2.27
UPF3AQ9H1J1 MIR1270-201ENST00000459320 83 ntBASIC0.85□□□□□ -2.27
UPF3AQ9H1J1 RNU7-123P-201ENST00000515911 60 ntBASIC0.85□□□□□ -2.27
UPF3AQ9H1J1 RNU5E-3P-201ENST00000515913 68 ntBASIC0.85□□□□□ -2.27
UPF3AQ9H1J1 MIR4305-201ENST00000583252 102 ntBASIC0.85□□□□□ -2.27
UPF3AQ9H1J1 MIR6835-201ENST00000621552 64 ntBASIC0.85□□□□□ -2.27
UPF3AQ9H1J1 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.27
UPF3AQ9H1J1 AL391516.1-201ENST00000554380 2449 ntBASIC0.84□□□□□ -2.27
UPF3AQ9H1J1 MIR30D-201ENST00000362283 70 ntBASIC0.84□□□□□ -2.27
UPF3AQ9H1J1 SNORD18B-201ENST00000365659 72 ntBASIC0.84□□□□□ -2.27
UPF3AQ9H1J1 AC015818.7-201ENST00000428754 109 ntBASIC0.84□□□□□ -2.27
UPF3AQ9H1J1 AC087499.7-201ENST00000441958 109 ntBASIC0.84□□□□□ -2.27
UPF3AQ9H1J1 RNU7-62P-201ENST00000458856 62 ntBASIC0.84□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.692-201ENST00000516627 105 ntBASIC0.84□□□□□ -2.27
UPF3AQ9H1J1 AP000753.3-201ENST00000604083 169 ntBASIC0.84□□□□□ -2.27
UPF3AQ9H1J1 U7.2-201ENST00000607576 63 ntBASIC0.84□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.343-201ENST00000365354 112 ntBASIC0.83□□□□□ -2.28
UPF3AQ9H1J1 SNORD50.2-201ENST00000365465 70 ntBASIC0.83□□□□□ -2.28
UPF3AQ9H1J1 RNU6-1104P-201ENST00000384723 104 ntBASIC0.83□□□□□ -2.28
UPF3AQ9H1J1 MIR508-201ENST00000384857 115 ntBASIC0.83□□□□□ -2.28
UPF3AQ9H1J1 MT-TI-201ENST00000387365 69 ntBASIC0.83□□□□□ -2.28
UPF3AQ9H1J1 RNA5SP261-201ENST00000410536 106 ntBASIC0.83□□□□□ -2.28
UPF3AQ9H1J1 AC022523.2-201ENST00000561045 150 ntBASIC0.83□□□□□ -2.28
UPF3AQ9H1J1 AC133485.4-201ENST00000561835 220 ntBASIC0.83□□□□□ -2.28
UPF3AQ9H1J1 AC138907.4-201ENST00000570107 226 ntBASIC0.83□□□□□ -2.28
UPF3AQ9H1J1 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.83□□□□□ -2.28
UPF3AQ9H1J1 MIR3152-201ENST00000579801 74 ntBASIC0.83□□□□□ -2.28
UPF3AQ9H1J1 AC021443.1-201ENST00000604478 211 ntBASIC0.83□□□□□ -2.28
UPF3AQ9H1J1 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 SNORD115-2-201ENST00000362842 82 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 Y_RNA.298-201ENST00000364960 107 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 SNORD115-20-201ENST00000365099 82 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 SNORA40-201ENST00000388090 126 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 MIR936-201ENST00000401264 98 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 SNORD111-201ENST00000408139 94 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 RNU6-1165P-201ENST00000410119 107 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 Y_RNA.617-201ENST00000410920 90 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 SNORD83.1-201ENST00000411362 77 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 AC096949.1-201ENST00000412047 152 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 AL158147.1-201ENST00000443970 75 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 RNU7-164P-201ENST00000459221 62 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 AC113410.1-201ENST00000505029 247 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 RNU6-781P-201ENST00000516377 101 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 RNY4P20-201ENST00000516678 93 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 AC004812.1-201ENST00000540773 146 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 AL137067.1-201ENST00000615933 120 ntBASIC0.82□□□□□ -2.28
UPF3AQ9H1J1 RNU6-235P-201ENST00000362644 107 ntBASIC0.81□□□□□ -2.28
UPF3AQ9H1J1 RNU6-704P-201ENST00000364162 103 ntBASIC0.81□□□□□ -2.28
UPF3AQ9H1J1 RNU6-1335P-201ENST00000365426 107 ntBASIC0.81□□□□□ -2.28
UPF3AQ9H1J1 SNORA18-201ENST00000384416 132 ntBASIC0.81□□□□□ -2.28
UPF3AQ9H1J1 Y_RNA.525-201ENST00000384570 113 ntBASIC0.81□□□□□ -2.28
UPF3AQ9H1J1 Y_RNA.531-201ENST00000384589 121 ntBASIC0.81□□□□□ -2.28
UPF3AQ9H1J1 RNU6-1237P-201ENST00000384777 107 ntBASIC0.81□□□□□ -2.28
UPF3AQ9H1J1 MIR548M-201ENST00000408260 86 ntBASIC0.81□□□□□ -2.28
UPF3AQ9H1J1 RNU6-971P-201ENST00000516920 106 ntBASIC0.81□□□□□ -2.28
UPF3AQ9H1J1 AC020891.4-201ENST00000605745 93 ntBASIC0.81□□□□□ -2.28
UPF3AQ9H1J1 AL662814.1-201ENST00000617364 121 ntBASIC0.81□□□□□ -2.28
UPF3AQ9H1J1 MIR6866-201ENST00000638146 69 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms