Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-994P-201ENST00000410507 111 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 RNA5SP261-201ENST00000410536 106 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 MTND4LP9-201ENST00000427694 174 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.8□□□□□ -2.28
USP28Q96RU2 MIR1270-201ENST00000459320 83 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 AC133485.4-201ENST00000561835 220 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 AC138907.4-201ENST00000570107 226 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 MIR4771-2-201ENST00000577758 74 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 MIR4771-1-201ENST00000582617 74 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 MIR4653-201ENST00000585107 83 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 AC020891.4-201ENST00000605745 93 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 AC011603.4-201ENST00000611325 277 ntBASIC0.8□□□□□ -2.28
USP28Q96RU2 Y_RNA.114-201ENST00000363265 113 ntBASIC0.79□□□□□ -2.28
USP28Q96RU2 RNU6-934P-201ENST00000365154 107 ntBASIC0.79□□□□□ -2.28
USP28Q96RU2 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.79□□□□□ -2.28
USP28Q96RU2 AC004941.2-201ENST00000427009 228 ntBASIC0.79□□□□□ -2.28
USP28Q96RU2 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.79□□□□□ -2.28
USP28Q96RU2 RNU7-164P-201ENST00000459221 62 ntBASIC0.79□□□□□ -2.28
USP28Q96RU2 AC004812.1-201ENST00000540773 146 ntBASIC0.79□□□□□ -2.28
USP28Q96RU2 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.79□□□□□ -2.28
USP28Q96RU2 AL662814.1-201ENST00000617364 121 ntBASIC0.79□□□□□ -2.28
USP28Q96RU2 AP001340.1-201ENST00000624405 217 ntBASIC0.79□□□□□ -2.28
USP28Q96RU2 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.79□□□□□ -2.28
USP28Q96RU2 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.79□□□□□ -2.28
USP28Q96RU2 RNU1-93P-201ENST00000364704 169 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 Y_RNA.280-201ENST00000364765 112 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 SNORA32-201ENST00000384072 121 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 RNU6-1104P-201ENST00000384723 104 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 MIR100-201ENST00000385259 80 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 RNA5SP247-201ENST00000411181 105 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 AL022718.1-201ENST00000412004 84 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 AL606490.4-201ENST00000423117 127 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 RNU7-113P-201ENST00000459273 62 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 RNY4P20-201ENST00000516678 93 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 MIR548AE2-201ENST00000583456 67 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 AL137067.1-201ENST00000615933 120 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 MIR8070-201ENST00000616510 88 ntBASIC0.78□□□□□ -2.28
USP28Q96RU2 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.77□□□□□ -2.29
USP28Q96RU2 Y_RNA.298-201ENST00000364960 107 ntBASIC0.77□□□□□ -2.29
USP28Q96RU2 Y_RNA.354-201ENST00000365448 111 ntBASIC0.77□□□□□ -2.29
USP28Q96RU2 MIR608-201ENST00000384820 100 ntBASIC0.77□□□□□ -2.29
USP28Q96RU2 MIR1827-201ENST00000408549 66 ntBASIC0.77□□□□□ -2.29
USP28Q96RU2 RNA5SP255-201ENST00000516370 107 ntBASIC0.77□□□□□ -2.29
USP28Q96RU2 Y_RNA.692-201ENST00000516627 105 ntBASIC0.77□□□□□ -2.29
USP28Q96RU2 RNA5SP33-201ENST00000516687 98 ntBASIC0.77□□□□□ -2.29
USP28Q96RU2 Y_RNA.703-201ENST00000516846 111 ntBASIC0.77□□□□□ -2.29
USP28Q96RU2 AC141846.1-201ENST00000568348 142 ntBASIC0.77□□□□□ -2.29
USP28Q96RU2 AC023934.1-201ENST00000574529 2389 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 RNU6-235P-201ENST00000362644 107 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 Y_RNA.343-201ENST00000365354 112 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 Y_RNA.531-201ENST00000384589 121 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 MIR499A-201ENST00000384903 122 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 MIR605-201ENST00000385078 83 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 MT-TI-201ENST00000387365 69 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 RNA5SP237-201ENST00000410414 113 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 AC096949.1-201ENST00000412047 152 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 RPS26P5-201ENST00000418544 335 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 RNU6-781P-201ENST00000516377 101 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 U7.2-201ENST00000607576 63 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 AL589743.1-201ENST00000551932 2712 ntBASIC0.76□□□□□ -2.29
USP28Q96RU2 RNY1P13-201ENST00000365030 105 ntBASIC0.75□□□□□ -2.29
USP28Q96RU2 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
USP28Q96RU2 Y_RNA.525-201ENST00000384570 113 ntBASIC0.75□□□□□ -2.29
USP28Q96RU2 U8.15-201ENST00000390947 134 ntBASIC0.75□□□□□ -2.29
USP28Q96RU2 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.75□□□□□ -2.29
USP28Q96RU2 FABP5P4-201ENST00000437203 171 ntBASIC0.75□□□□□ -2.29
USP28Q96RU2 SUMO1P3-201ENST00000439961 304 ntBASIC0.75□□□□□ -2.29
USP28Q96RU2 RNU7-185P-201ENST00000459215 60 ntBASIC0.75□□□□□ -2.29
USP28Q96RU2 MIR4676-201ENST00000583078 72 ntBASIC0.75□□□□□ -2.29
USP28Q96RU2 MIR6835-201ENST00000621552 64 ntBASIC0.75□□□□□ -2.29
USP28Q96RU2 MIR1-1-201ENST00000362147 71 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 SNORD115-2-201ENST00000362842 82 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 SNORD115-20-201ENST00000365099 82 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 RNU6-746P-201ENST00000384112 109 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 Y_RNA.586-201ENST00000391146 98 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 AL158147.1-201ENST00000443970 75 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 MIR18B-201ENST00000454574 71 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 RN7SKP19-201ENST00000516016 252 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 RNU7-79P-201ENST00000516082 62 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 RNU6-971P-201ENST00000516920 106 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 SNORA4-201ENST00000584302 138 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 AL359881.1-201ENST00000602916 267 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 AC008608.1-201ENST00000603910 127 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 RMST_2.1-201ENST00000617263 136 ntBASIC0.74□□□□□ -2.29
USP28Q96RU2 HSBP1P2-201ENST00000299671 229 ntBASIC0.73□□□□□ -2.29
USP28Q96RU2 Y_RNA.224-201ENST00000364308 111 ntBASIC0.73□□□□□ -2.29
USP28Q96RU2 Y_RNA.226-201ENST00000364337 114 ntBASIC0.73□□□□□ -2.29
USP28Q96RU2 MIR520F-201ENST00000384824 87 ntBASIC0.73□□□□□ -2.29
USP28Q96RU2 MT-TF-201ENST00000387314 71 ntBASIC0.73□□□□□ -2.29
USP28Q96RU2 SNORA40-201ENST00000388090 126 ntBASIC0.73□□□□□ -2.29
USP28Q96RU2 MIR1287-201ENST00000408492 90 ntBASIC0.73□□□□□ -2.29
USP28Q96RU2 RNU6-1086P-201ENST00000410930 100 ntBASIC0.73□□□□□ -2.29
USP28Q96RU2 AC067940.1-201ENST00000458411 300 ntBASIC0.73□□□□□ -2.29
USP28Q96RU2 RNU6-1211P-201ENST00000459179 105 ntBASIC0.73□□□□□ -2.29
USP28Q96RU2 RNU7-35P-201ENST00000517174 62 ntBASIC0.73□□□□□ -2.29
USP28Q96RU2 MIR4804-201ENST00000581683 73 ntBASIC0.73□□□□□ -2.29
USP28Q96RU2 MIR1263-201ENST00000408324 86 ntBASIC0.72□□□□□ -2.29
USP28Q96RU2 SNORD99-201ENST00000408612 74 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms