Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SNORD113.3-201ENST00000364630 78 ntBASIC0.58□□□□□ -2.32
ZNF540Q8NDQ6 RNU4-16P-201ENST00000364737 141 ntBASIC0.58□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.357-201ENST00000365487 109 ntBASIC0.58□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.506-201ENST00000384494 102 ntBASIC0.58□□□□□ -2.32
ZNF540Q8NDQ6 MIR7-2-201ENST00000384970 110 ntBASIC0.58□□□□□ -2.32
ZNF540Q8NDQ6 AC096949.1-201ENST00000412047 152 ntBASIC0.58□□□□□ -2.32
ZNF540Q8NDQ6 snoU13.2-201ENST00000459201 104 ntBASIC0.58□□□□□ -2.32
ZNF540Q8NDQ6 MIR4264-201ENST00000583520 66 ntBASIC0.58□□□□□ -2.32
ZNF540Q8NDQ6 MIR6844-201ENST00000637122 62 ntBASIC0.58□□□□□ -2.32
ZNF540Q8NDQ6 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 RNU6-151P-201ENST00000364158 107 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 RNU6-309P-201ENST00000364573 106 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.270-201ENST00000364693 104 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.280-201ENST00000364765 112 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.464-201ENST00000384282 110 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 SNORA2B-201ENST00000384583 137 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 MIR569-201ENST00000385228 96 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 RNU6-460P-201ENST00000391158 108 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 SNORD99-201ENST00000408612 74 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 RNA5SP144-201ENST00000410846 116 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 MIR1270-201ENST00000459320 83 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 RNU7-80P-201ENST00000459562 61 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 AC112693.2-201ENST00000556538 232 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.757-201ENST00000578934 114 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 AP000753.3-201ENST00000604083 169 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 AC108081.1-201ENST00000604358 221 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 uc_338.17-201ENST00000619633 179 ntBASIC0.57□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.8-201ENST00000362353 102 ntBASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.171-201ENST00000363760 102 ntBASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 RNU6-449P-201ENST00000383914 107 ntBASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 RNY1P6-201ENST00000384193 109 ntBASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.454-201ENST00000384224 113 ntBASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 SNORD111-201ENST00000408139 94 ntBASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 MIR1827-201ENST00000408549 66 ntBASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 SNORD83.1-201ENST00000411362 77 ntBASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 RNU7-62P-201ENST00000458856 62 ntBASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 RNU7-200P-201ENST00000516105 62 ntBASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 RNU2-35P-201ENST00000516446 142 ntBASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 AC020891.4-201ENST00000605745 93 ntBASIC0.56□□□□□ -2.32
ZNF540Q8NDQ6 SNORA22.1-201ENST00000362701 134 ntBASIC0.55□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.120-201ENST00000363304 110 ntBASIC0.55□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.470-201ENST00000384307 117 ntBASIC0.55□□□□□ -2.32
ZNF540Q8NDQ6 SNORD38B-201ENST00000384690 67 ntBASIC0.55□□□□□ -2.32
ZNF540Q8NDQ6 MIR588-201ENST00000384900 83 ntBASIC0.55□□□□□ -2.32
ZNF540Q8NDQ6 RNU6-994P-201ENST00000410507 111 ntBASIC0.55□□□□□ -2.32
ZNF540Q8NDQ6 RNA5SP272-201ENST00000516095 111 ntBASIC0.55□□□□□ -2.32
ZNF540Q8NDQ6 IGKV1-22-201ENST00000524313 326 ntBASIC0.55□□□□□ -2.32
ZNF540Q8NDQ6 MIR3668-201ENST00000582138 75 ntBASIC0.55□□□□□ -2.32
ZNF540Q8NDQ6 SNORD38B-202ENST00000625943 69 ntBASIC0.55□□□□□ -2.32
ZNF540Q8NDQ6 AC010332.2-201ENST00000613083 1904 ntBASIC0.55□□□□□ -2.32
ZNF540Q8NDQ6 MIR302B-201ENST00000362188 73 ntBASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.215-201ENST00000364204 112 ntBASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.400-201ENST00000383963 111 ntBASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 Y_RNA.584-201ENST00000391090 114 ntBASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 AL603914.1-201ENST00000401964 204 ntBASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 RNU6-1165P-201ENST00000410119 107 ntBASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 RNU6-240P-201ENST00000516098 97 ntBASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 SNORA25.12-201ENST00000516202 82 ntBASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 AL662814.1-201ENST00000617364 121 ntBASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 MIR5087-201ENST00000635826 76 ntBASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.54□□□□□ -2.32
ZNF540Q8NDQ6 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.53□□□□□ -2.32
ZNF540Q8NDQ6 RNY1P4-201ENST00000384595 115 ntBASIC0.53□□□□□ -2.32
ZNF540Q8NDQ6 SNORA20-201ENST00000384662 132 ntBASIC0.53□□□□□ -2.32
ZNF540Q8NDQ6 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.53□□□□□ -2.32
ZNF540Q8NDQ6 AL512326.2-201ENST00000426359 151 ntBASIC0.53□□□□□ -2.32
ZNF540Q8NDQ6 RNU6-346P-201ENST00000516288 111 ntBASIC0.53□□□□□ -2.32
ZNF540Q8NDQ6 AC004812.1-201ENST00000540773 146 ntBASIC0.53□□□□□ -2.32
ZNF540Q8NDQ6 MIR3121-201ENST00000579680 77 ntBASIC0.53□□□□□ -2.32
ZNF540Q8NDQ6 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.33
ZNF540Q8NDQ6 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 SNORD115-2-201ENST00000362842 82 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 Y_RNA.294-201ENST00000364916 102 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-915P-201ENST00000364943 103 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 SNORD115-20-201ENST00000365099 82 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 Y_RNA.366-201ENST00000365540 102 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 RNY1P5-201ENST00000383890 115 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-945P-201ENST00000383947 107 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 Y_RNA.420-201ENST00000384043 110 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-209P-201ENST00000384118 107 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 MT-TI-201ENST00000387365 69 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 SNORD37.2-201ENST00000391075 66 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 RNU1-119P-201ENST00000391122 165 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 MIR936-201ENST00000401264 98 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 RNA5SP436-201ENST00000516020 115 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-426P-201ENST00000516464 97 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 Y_RNA.690-201ENST00000516603 95 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 MIR4771-2-201ENST00000577758 74 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 MIR548X2-201ENST00000579776 100 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 MIR4771-1-201ENST00000582617 74 ntBASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.52□□□□□ -2.33
ZNF540Q8NDQ6 AC011603.4-201ENST00000611325 277 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 175.4 ms