Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AL162726.3-218ENST00000636401 95 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.37□□□□□ -2.19
HOXA4Q00056 MIR577-201ENST00000385196 96 ntBASIC1.37□□□□□ -2.19
HOXA4Q00056 RNU6-679P-201ENST00000391003 106 ntBASIC1.37□□□□□ -2.19
HOXA4Q00056 MIR934-201ENST00000401241 83 ntBASIC1.37□□□□□ -2.19
HOXA4Q00056 AC245517.4-201ENST00000448601 281 ntBASIC1.37□□□□□ -2.19
HOXA4Q00056 AC048334.1-201ENST00000477975 159 ntBASIC1.37□□□□□ -2.19
HOXA4Q00056 RNU7-79P-201ENST00000516082 62 ntBASIC1.37□□□□□ -2.19
HOXA4Q00056 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.37□□□□□ -2.19
HOXA4Q00056 MIR4303-201ENST00000581299 66 ntBASIC1.37□□□□□ -2.19
HOXA4Q00056 AC012493.3-201ENST00000604494 112 ntBASIC1.37□□□□□ -2.19
HOXA4Q00056 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.37□□□□□ -2.19
HOXA4Q00056 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
HOXA4Q00056 AL161722.3-201ENST00000605789 2983 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
HOXA4Q00056 MIR103A2-201ENST00000362154 78 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 SNORD115-19-201ENST00000363098 82 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 SNORD115-18-201ENST00000363293 82 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 RNU6-654P-201ENST00000364373 107 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 SNORD115-17-201ENST00000364612 82 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 MIR1302-5-201ENST00000408164 150 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 RPL39P25-201ENST00000449384 154 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 snoU13.23-201ENST00000458863 104 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 AC108210.2-201ENST00000503681 201 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 RNU6-795P-201ENST00000516323 103 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 RN7SKP88-201ENST00000516847 250 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 RNU7-35P-201ENST00000517174 62 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 RNU6-902P-201ENST00000517212 91 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 AC104984.5-201ENST00000586878 94 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 AL645939.4-201ENST00000604495 135 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 7SK.8-201ENST00000612110 250 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 7SK.11-201ENST00000615477 250 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 7SK.13-201ENST00000622040 250 ntBASIC1.36□□□□□ -2.19
HOXA4Q00056 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.35□□□□□ -2.19
HOXA4Q00056 Y_RNA.49-201ENST00000362714 112 ntBASIC1.35□□□□□ -2.19
HOXA4Q00056 Y_RNA.247-201ENST00000364500 92 ntBASIC1.35□□□□□ -2.19
HOXA4Q00056 Y_RNA.360-201ENST00000365512 102 ntBASIC1.35□□□□□ -2.19
HOXA4Q00056 RNU6-205P-201ENST00000390858 107 ntBASIC1.35□□□□□ -2.19
HOXA4Q00056 RNA5SP95-201ENST00000410319 137 ntBASIC1.35□□□□□ -2.19
HOXA4Q00056 RNU6-1054P-201ENST00000411293 104 ntBASIC1.35□□□□□ -2.19
HOXA4Q00056 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.35□□□□□ -2.19
HOXA4Q00056 AC012531.4-201ENST00000616509 177 ntBASIC1.35□□□□□ -2.19
HOXA4Q00056 RNU6-1099P-201ENST00000363533 107 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 Y_RNA.342-201ENST00000365352 113 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 Y_RNA.369-201ENST00000365568 117 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 MIR588-201ENST00000384900 83 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 SNORD77B-201ENST00000391112 67 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 SNORA7.5-201ENST00000410672 110 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 RNU6-1086P-201ENST00000410930 100 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.34□□□□□ -2.19
HOXA4Q00056 snoU13.2-201ENST00000459201 104 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 MIR2115-201ENST00000516657 100 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 Y_RNA.694-201ENST00000516677 117 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 MIR4524B-201ENST00000581569 115 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.34□□□□□ -2.19
HOXA4Q00056 MIR502-201ENST00000606349 86 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 MIR6740-201ENST00000618268 113 ntBASIC1.34□□□□□ -2.19
HOXA4Q00056 RNU6-363P-201ENST00000362895 105 ntBASIC1.33□□□□□ -2.2
HOXA4Q00056 SNORD73B-201ENST00000364394 72 ntBASIC1.33□□□□□ -2.2
HOXA4Q00056 RNU4-67P-201ENST00000364569 141 ntBASIC1.33□□□□□ -2.2
HOXA4Q00056 Y_RNA.388-201ENST00000383919 113 ntBASIC1.33□□□□□ -2.2
HOXA4Q00056 Y_RNA.466-201ENST00000384294 113 ntBASIC1.33□□□□□ -2.2
HOXA4Q00056 RNU11-2P-201ENST00000516898 142 ntBASIC1.33□□□□□ -2.2
HOXA4Q00056 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.33□□□□□ -2.2
HOXA4Q00056 uc_338.6-201ENST00000613544 171 ntBASIC1.33□□□□□ -2.2
HOXA4Q00056 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.32□□□□□ -2.2
HOXA4Q00056 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.32□□□□□ -2.2
HOXA4Q00056 RNY3P2-201ENST00000362918 102 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 RNU1-42P-201ENST00000364033 160 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 RNY1P13-201ENST00000365030 105 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 Y_RNA.363-201ENST00000365529 113 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 MRPL35P3-201ENST00000421557 364 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 MTATP8P2-201ENST00000435212 202 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 UBL5P1-201ENST00000507979 193 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 RNU7-61P-201ENST00000515897 61 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 SNORA31.2-201ENST00000516019 134 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 SNORD67.1-201ENST00000516618 108 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 RNU6-521P-201ENST00000516663 105 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 MIR4285-201ENST00000581001 85 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 AC006254.2-201ENST00000603259 279 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 AP000753.3-201ENST00000604083 169 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 FAM71BP1-201ENST00000604431 523 ntBASIC1.32□□□□□ -2.2
HOXA4Q00056 Y_RNA.140-201ENST00000363474 103 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 Y_RNA.155-201ENST00000363632 101 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 Y_RNA.290-201ENST00000364879 114 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 RNA5SP237-201ENST00000410414 113 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 RNU6-162P-201ENST00000516228 103 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 AC141846.1-201ENST00000568348 142 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 MIR4264-201ENST00000583520 66 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 MIR4769-201ENST00000584126 77 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 AC062037.1-201ENST00000605302 128 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 AC020891.4-201ENST00000605745 93 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 AL662814.1-201ENST00000617364 121 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 AC105081.1-201ENST00000617727 106 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 SEPT14P17-201ENST00000617978 177 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 AL353997.5-201ENST00000618886 171 ntBASIC1.31□□□□□ -2.2
HOXA4Q00056 Y_RNA.107-201ENST00000363190 121 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 RNU6-832P-201ENST00000363319 107 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 RNU6-294P-201ENST00000364999 102 ntBASIC1.3□□□□□ -2.2
HOXA4Q00056 SNORD115-35-201ENST00000365122 82 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms