Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.39□□□□□ -2.35
HOXD13P35453 MRPS18CP4-201ENST00000535821 231 ntBASIC0.39□□□□□ -2.35
HOXD13P35453 MIR4719-201ENST00000585233 84 ntBASIC0.39□□□□□ -2.35
HOXD13P35453 MIR6082-201ENST00000613604 109 ntBASIC0.39□□□□□ -2.35
HOXD13P35453 Y_RNA.174-201ENST00000363781 105 ntBASIC0.38□□□□□ -2.35
HOXD13P35453 Y_RNA.193-201ENST00000363979 102 ntBASIC0.38□□□□□ -2.35
HOXD13P35453 RNA5SP517-201ENST00000364724 117 ntBASIC0.38□□□□□ -2.35
HOXD13P35453 RNU6-702P-201ENST00000364982 107 ntBASIC0.38□□□□□ -2.35
HOXD13P35453 RNU6-135P-201ENST00000516769 101 ntBASIC0.38□□□□□ -2.35
HOXD13P35453 Y_RNA.13-201ENST00000362403 112 ntBASIC0.37□□□□□ -2.35
HOXD13P35453 RNU6-1099P-201ENST00000363533 107 ntBASIC0.37□□□□□ -2.35
HOXD13P35453 SNORD18A-201ENST00000363753 72 ntBASIC0.37□□□□□ -2.35
HOXD13P35453 RNU4-16P-201ENST00000364737 141 ntBASIC0.37□□□□□ -2.35
HOXD13P35453 RNU6-196P-201ENST00000384315 107 ntBASIC0.37□□□□□ -2.35
HOXD13P35453 SNORA72.6-201ENST00000384520 129 ntBASIC0.37□□□□□ -2.35
HOXD13P35453 RNU6-1086P-201ENST00000410930 100 ntBASIC0.37□□□□□ -2.35
HOXD13P35453 SCARNA15.1-201ENST00000516384 125 ntBASIC0.37□□□□□ -2.35
HOXD13P35453 AC022523.2-201ENST00000561045 150 ntBASIC0.37□□□□□ -2.35
HOXD13P35453 MIR4431-201ENST00000579990 94 ntBASIC0.37□□□□□ -2.35
HOXD13P35453 MIR5087-201ENST00000635826 76 ntBASIC0.37□□□□□ -2.35
HOXD13P35453 U6.106-201ENST00000636360 105 ntBASIC0.37□□□□□ -2.35
HOXD13P35453 MTND5P32-201ENST00000560711 1802 ntBASIC0.36□□□□□ -2.35
HOXD13P35453 Y_RNA.412-201ENST00000384001 104 ntBASIC0.36□□□□□ -2.35
HOXD13P35453 Y_RNA.435-201ENST00000384095 112 ntBASIC0.36□□□□□ -2.35
HOXD13P35453 SNORA50A-201ENST00000384225 134 ntBASIC0.36□□□□□ -2.35
HOXD13P35453 Y_RNA.567-201ENST00000384736 106 ntBASIC0.36□□□□□ -2.35
HOXD13P35453 AL022718.1-201ENST00000412004 84 ntBASIC0.36□□□□□ -2.35
HOXD13P35453 MTND3P2-201ENST00000438452 342 ntBASIC0.36□□□□□ -2.35
HOXD13P35453 RNU6-863P-201ENST00000515989 104 ntBASIC0.36□□□□□ -2.35
HOXD13P35453 RNA5SP134-201ENST00000516492 96 ntBASIC0.36□□□□□ -2.35
HOXD13P35453 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.36□□□□□ -2.35
HOXD13P35453 Y_RNA.83-201ENST00000363005 113 ntBASIC0.35□□□□□ -2.35
HOXD13P35453 Y_RNA.200-201ENST00000364018 102 ntBASIC0.35□□□□□ -2.35
HOXD13P35453 RNU6-1327P-201ENST00000365302 105 ntBASIC0.35□□□□□ -2.35
HOXD13P35453 Y_RNA.393-201ENST00000383936 102 ntBASIC0.35□□□□□ -2.35
HOXD13P35453 AL512326.2-201ENST00000426359 151 ntBASIC0.35□□□□□ -2.35
HOXD13P35453 AC107027.2-201ENST00000512197 115 ntBASIC0.35□□□□□ -2.35
HOXD13P35453 Y_RNA.757-201ENST00000578934 114 ntBASIC0.35□□□□□ -2.35
HOXD13P35453 MIR4491-201ENST00000581087 68 ntBASIC0.35□□□□□ -2.35
HOXD13P35453 AC243829.6-201ENST00000612652 106 ntBASIC0.35□□□□□ -2.35
HOXD13P35453 Y_RNA.60-201ENST00000362831 98 ntBASIC0.34□□□□□ -2.36
HOXD13P35453 RNU6-1020P-201ENST00000363684 107 ntBASIC0.34□□□□□ -2.36
HOXD13P35453 Y_RNA.447-201ENST00000384184 113 ntBASIC0.34□□□□□ -2.36
HOXD13P35453 MTATP6P21-201ENST00000440681 189 ntBASIC0.34□□□□□ -2.36
HOXD13P35453 RNU7-113P-201ENST00000459273 62 ntBASIC0.34□□□□□ -2.36
HOXD13P35453 RNU6-111P-201ENST00000517179 105 ntBASIC0.34□□□□□ -2.36
HOXD13P35453 AC133485.4-201ENST00000561835 220 ntBASIC0.34□□□□□ -2.36
HOXD13P35453 RNU6-312P-201ENST00000364629 107 ntBASIC0.33□□□□□ -2.36
HOXD13P35453 Y_RNA.337-201ENST00000365312 102 ntBASIC0.33□□□□□ -2.36
HOXD13P35453 SNORA8.2-201ENST00000384372 139 ntBASIC0.33□□□□□ -2.36
HOXD13P35453 Y_RNA.588-201ENST00000391254 102 ntBASIC0.33□□□□□ -2.36
HOXD13P35453 Y_RNA.617-201ENST00000410920 90 ntBASIC0.33□□□□□ -2.36
HOXD13P35453 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.33□□□□□ -2.36
HOXD13P35453 AL589743.1-201ENST00000551932 2712 ntBASIC0.33□□□□□ -2.36
HOXD13P35453 RNY1P13-201ENST00000365030 105 ntBASIC0.32□□□□□ -2.36
HOXD13P35453 VTRNA1-3-201ENST00000365645 89 ntBASIC0.32□□□□□ -2.36
HOXD13P35453 Y_RNA.452-201ENST00000384202 108 ntBASIC0.32□□□□□ -2.36
HOXD13P35453 RNU6-918P-201ENST00000391219 106 ntBASIC0.32□□□□□ -2.36
HOXD13P35453 RNA5SP144-201ENST00000410846 116 ntBASIC0.32□□□□□ -2.36
HOXD13P35453 RNU7-79P-201ENST00000516082 62 ntBASIC0.32□□□□□ -2.36
HOXD13P35453 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.32□□□□□ -2.36
HOXD13P35453 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
HOXD13P35453 MIR411-201ENST00000362239 96 ntBASIC0.31□□□□□ -2.36
HOXD13P35453 Y_RNA.52-201ENST00000362760 96 ntBASIC0.31□□□□□ -2.36
HOXD13P35453 SNORD118-201ENST00000363593 134 ntBASIC0.31□□□□□ -2.36
HOXD13P35453 RNU6-1229P-201ENST00000364295 107 ntBASIC0.31□□□□□ -2.36
HOXD13P35453 RNU6-818P-201ENST00000364837 108 ntBASIC0.31□□□□□ -2.36
HOXD13P35453 Y_RNA.697-201ENST00000516776 113 ntBASIC0.31□□□□□ -2.36
HOXD13P35453 DEFB131E-201ENST00000532329 154 ntBASIC0.31□□□□□ -2.36
HOXD13P35453 MIR4503-201ENST00000582187 83 ntBASIC0.31□□□□□ -2.36
HOXD13P35453 AC011603.4-201ENST00000611325 277 ntBASIC0.31□□□□□ -2.36
HOXD13P35453 SNORD44.1-201ENST00000363202 61 ntBASIC0.3□□□□□ -2.36
HOXD13P35453 Y_RNA.536-201ENST00000384621 113 ntBASIC0.3□□□□□ -2.36
HOXD13P35453 RNA5SP33-201ENST00000516687 98 ntBASIC0.3□□□□□ -2.36
HOXD13P35453 MIR3149-201ENST00000584629 83 ntBASIC0.3□□□□□ -2.36
HOXD13P35453 Y_RNA.171-201ENST00000363760 102 ntBASIC0.29□□□□□ -2.36
HOXD13P35453 Y_RNA.307-201ENST00000365022 117 ntBASIC0.29□□□□□ -2.36
HOXD13P35453 RNU6-690P-201ENST00000365242 106 ntBASIC0.29□□□□□ -2.36
HOXD13P35453 Y_RNA.489-201ENST00000384410 101 ntBASIC0.29□□□□□ -2.36
HOXD13P35453 RNU6-535P-201ENST00000384722 107 ntBASIC0.29□□□□□ -2.36
HOXD13P35453 MIR644A-201ENST00000385262 94 ntBASIC0.29□□□□□ -2.36
HOXD13P35453 SNORA75.5-201ENST00000391291 81 ntBASIC0.29□□□□□ -2.36
HOXD13P35453 SNRPGP12-201ENST00000449481 213 ntBASIC0.29□□□□□ -2.36
HOXD13P35453 RN7SL793P-201ENST00000583259 296 ntBASIC0.29□□□□□ -2.36
HOXD13P35453 SNORA25.18-201ENST00000607153 114 ntBASIC0.29□□□□□ -2.36
HOXD13P35453 RNU6-349P-201ENST00000362402 107 ntBASIC0.28□□□□□ -2.36
HOXD13P35453 RNU4-58P-201ENST00000363192 141 ntBASIC0.28□□□□□ -2.36
HOXD13P35453 RNA5SP62-201ENST00000363457 110 ntBASIC0.28□□□□□ -2.36
HOXD13P35453 Y_RNA.357-201ENST00000365487 109 ntBASIC0.28□□□□□ -2.36
HOXD13P35453 RNU6-1194P-201ENST00000516208 104 ntBASIC0.28□□□□□ -2.36
HOXD13P35453 Y_RNA.680-201ENST00000516441 93 ntBASIC0.28□□□□□ -2.36
HOXD13P35453 RNU7-35P-201ENST00000517174 62 ntBASIC0.28□□□□□ -2.36
HOXD13P35453 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.28□□□□□ -2.36
HOXD13P35453 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.28□□□□□ -2.36
HOXD13P35453 SNORD115-2-201ENST00000362842 82 ntBASIC0.27□□□□□ -2.37
HOXD13P35453 SNORD114-23-201ENST00000363536 72 ntBASIC0.27□□□□□ -2.37
HOXD13P35453 SNORD115-20-201ENST00000365099 82 ntBASIC0.27□□□□□ -2.37
HOXD13P35453 RNU6-1336P-201ENST00000383886 109 ntBASIC0.27□□□□□ -2.37
HOXD13P35453 RNU6-768P-201ENST00000384683 107 ntBASIC0.27□□□□□ -2.37
HOXD13P35453 RNU2-59P-201ENST00000410482 191 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 185 ms