Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdk5rap3Q99LM2 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdk5rap3Q99LM2 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Cdk5rap3Q99LM2 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cdk5rap3Q99LM2 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
Cdk5rap3Q99LM2 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cdk5rap3Q99LM2 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdk5rap3Q99LM2 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdk5rap3Q99LM2 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cdk5rap3Q99LM2 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdk5rap3Q99LM2 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cdk5rap3Q99LM2 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Gm45058-201ENSMUST00000205810 766 ntBASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Gm44443-201ENSMUST00000204396 5633 ntBASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdk5rap3Q99LM2 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Gm7889-201ENSMUST00000185591 958 ntBASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdk5rap3Q99LM2 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Gm18959-201ENSMUST00000208954 655 ntBASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Spcs1-207ENSMUST00000228767 1008 ntBASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
Cdk5rap3Q99LM2 App-207ENSMUST00000227737 2827 ntBASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms