Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16.84■□□□□ 0.29
Clp1Q99LI9 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.84■□□□□ 0.29
Clp1Q99LI9 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Gm5366-201ENSMUST00000215494 1338 ntBASIC16.84■□□□□ 0.29
Clp1Q99LI9 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC16.84■□□□□ 0.29
Clp1Q99LI9 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC16.83■□□□□ 0.28
Clp1Q99LI9 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Mir6956-201ENSMUST00000183598 62 ntBASIC16.82■□□□□ 0.28
Clp1Q99LI9 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Gm45612-201ENSMUST00000211320 160 ntBASIC16.82■□□□□ 0.28
Clp1Q99LI9 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clp1Q99LI9 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Clp1Q99LI9 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Gm11841-201ENSMUST00000117060 1963 ntBASIC16.8■□□□□ 0.28
Clp1Q99LI9 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clp1Q99LI9 Gm38318-201ENSMUST00000195769 1706 ntBASIC16.8■□□□□ 0.28
Clp1Q99LI9 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC16.8■□□□□ 0.28
Clp1Q99LI9 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms