Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Cchcr1Q8K2I2 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cchcr1Q8K2I2 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cchcr1Q8K2I2 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cchcr1Q8K2I2 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cchcr1Q8K2I2 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Cchcr1Q8K2I2 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cchcr1Q8K2I2 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Cchcr1Q8K2I2 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cchcr1Q8K2I2 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cchcr1Q8K2I2 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.62
Cchcr1Q8K2I2 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Gm44616-201ENSMUST00000206417 1732 ntBASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Gm9889-202ENSMUST00000206983 1577 ntBASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Prob1-201ENSMUST00000097619 3021 ntBASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Gm10013-201ENSMUST00000106074 672 ntBASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Cchcr1Q8K2I2 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cchcr1Q8K2I2 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Gm38327-201ENSMUST00000195852 1755 ntBASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cchcr1Q8K2I2 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Gm9013-201ENSMUST00000132939 882 ntBASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cchcr1Q8K2I2 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms