Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC19.33■□□□□ 0.68
Brf1Q8CFK2 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC19.33■□□□□ 0.68
Brf1Q8CFK2 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Brf1Q8CFK2 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
Brf1Q8CFK2 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Brf1Q8CFK2 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Brf1Q8CFK2 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Gm1818-201ENSMUST00000169406 1184 ntBASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Gm44454-201ENSMUST00000198541 138 ntBASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Gm10459-201ENSMUST00000202708 1155 ntBASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Brf1Q8CFK2 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Wnt10b-206ENSMUST00000228546 2709 ntBASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Gm44729-201ENSMUST00000206759 2052 ntBASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Brf1Q8CFK2 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Gm8349-201ENSMUST00000182720 1003 ntBASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Brf1Q8CFK2 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Gm18669-201ENSMUST00000216049 778 ntBASIC19.29■□□□□ 0.68
Brf1Q8CFK2 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms