Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Gfra2-202ENSMUST00000227633 1480 ntBASIC18.89■□□□□ 0.61
Nup88Q8CEC0 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Gm7461-201ENSMUST00000058918 827 ntBASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC18.88■□□□□ 0.61
Nup88Q8CEC0 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Gm11336-201ENSMUST00000118168 334 ntBASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Spr-ps1-201ENSMUST00000089584 605 ntBASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nup88Q8CEC0 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Gm24589-201ENSMUST00000116692 94 ntBASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Gm34391-201ENSMUST00000203706 907 ntBASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Nup88Q8CEC0 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Birc2-201ENSMUST00000054878 378 ntBASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nup88Q8CEC0 Zkscan3-208ENSMUST00000224820 5398 ntBASIC18.84■□□□□ 0.61
Nup88Q8CEC0 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nup88Q8CEC0 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nup88Q8CEC0 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC18.84■□□□□ 0.61
Nup88Q8CEC0 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Nup88Q8CEC0 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nup88Q8CEC0 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nup88Q8CEC0 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.84■□□□□ 0.61
Nup88Q8CEC0 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nup88Q8CEC0 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC18.84■□□□□ 0.61
Nup88Q8CEC0 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
Nup88Q8CEC0 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC18.84■□□□□ 0.61
Nup88Q8CEC0 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 67.2 ms