Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Atg4aQ8C9S8 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Atg4aQ8C9S8 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Prob1-201ENSMUST00000097619 3021 ntBASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Gm15165-201ENSMUST00000118140 502 ntBASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Gm12895-201ENSMUST00000122214 226 ntBASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Atg4aQ8C9S8 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Ccdc166-201ENSMUST00000182172 2584 ntBASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Gm10459-201ENSMUST00000202708 1155 ntBASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Vti1a-206ENSMUST00000225529 1244 ntBASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Atg4aQ8C9S8 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Gm18669-201ENSMUST00000216049 778 ntBASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Atg4aQ8C9S8 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Gm16011-201ENSMUST00000121567 2662 ntBASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Gm6257-201ENSMUST00000163864 910 ntBASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Gm28033-201ENSMUST00000184224 96 ntBASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Atg4aQ8C9S8 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Atg4aQ8C9S8 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Atg4aQ8C9S8 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Atg4aQ8C9S8 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Atg4aQ8C9S8 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Atg4aQ8C9S8 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms