Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm4899-201ENSMUST00000178708 719 ntBASIC21.9■■□□□ 1.1
Usp40Q8BWR4 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC21.9■■□□□ 1.1
Usp40Q8BWR4 Gm37153-201ENSMUST00000193637 231 ntBASIC21.9■■□□□ 1.1
Usp40Q8BWR4 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Usp40Q8BWR4 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Usp40Q8BWR4 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Usp40Q8BWR4 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Usp40Q8BWR4 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Usp40Q8BWR4 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Usp40Q8BWR4 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Usp40Q8BWR4 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Usp40Q8BWR4 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Usp40Q8BWR4 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
Usp40Q8BWR4 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
Usp40Q8BWR4 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Usp40Q8BWR4 Gm11873-201ENSMUST00000117877 1304 ntBASIC21.89■■□□□ 1.1
Usp40Q8BWR4 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Usp40Q8BWR4 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC21.89■■□□□ 1.09
Usp40Q8BWR4 Gm45683-201ENSMUST00000210825 1247 ntBASIC21.89■■□□□ 1.09
Usp40Q8BWR4 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Usp40Q8BWR4 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC21.89■■□□□ 1.09
Usp40Q8BWR4 Gm10175-201ENSMUST00000086013 645 ntBASIC21.89■■□□□ 1.09
Usp40Q8BWR4 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Usp40Q8BWR4 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Usp40Q8BWR4 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Usp40Q8BWR4 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC21.89■■□□□ 1.09
Usp40Q8BWR4 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Usp40Q8BWR4 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Gm45774-201ENSMUST00000211992 2665 ntBASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Usp40Q8BWR4 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Gm11185-201ENSMUST00000117732 1007 ntBASIC21.87■■□□□ 1.09
Usp40Q8BWR4 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Gm25911-201ENSMUST00000157621 56 ntBASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Gm43575-201ENSMUST00000196420 516 ntBASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Usp40Q8BWR4 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Gm27300-201ENSMUST00000184085 97 ntBASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Gm27335-201ENSMUST00000184758 97 ntBASIC21.86■■□□□ 1.09
Usp40Q8BWR4 AC131709.1-201ENSMUST00000224731 1180 ntBASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
Usp40Q8BWR4 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC21.85■■□□□ 1.09
Usp40Q8BWR4 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms