Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Gm15358-201ENSMUST00000119249 520 ntBASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Snrnp40Q6PE01 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Mir1895-201ENSMUST00000122615 79 ntBASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Gm17968-201ENSMUST00000194902 784 ntBASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Snrnp40Q6PE01 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Snrnp40Q6PE01 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Snrnp40Q6PE01 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Snrnp40Q6PE01 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Snrnp40Q6PE01 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Snrnp40Q6PE01 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Snrnp40Q6PE01 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Snrnp40Q6PE01 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Snrnp40Q6PE01 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.02□□□□□ -0.16
Snrnp40Q6PE01 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Snrnp40Q6PE01 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Snrnp40Q6PE01 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Gm27494-201ENSMUST00000184735 189 ntBASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Snrnp40Q6PE01 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 Best4-ps-201ENSMUST00000129783 1380 ntBASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC14.01□□□□□ -0.17
Snrnp40Q6PE01 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms