Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Ntrk2-205ENSMUST00000224402 2284 ntBASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Sh3rf1Q69ZI1 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Gm26039-201ENSMUST00000158152 144 ntBASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Sh3rf1Q69ZI1 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Gm42473-201ENSMUST00000201056 2291 ntBASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Gm17807-201ENSMUST00000186869 298 ntBASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Gm17971-201ENSMUST00000190239 806 ntBASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Sh3rf1Q69ZI1 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms