Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim27Q62158 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
Trim27Q62158 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC19.66■□□□□ 0.74
Trim27Q62158 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
Trim27Q62158 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC19.66■□□□□ 0.74
Trim27Q62158 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Gm25406-201ENSMUST00000157599 105 ntBASIC19.66■□□□□ 0.74
Trim27Q62158 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC19.66■□□□□ 0.74
Trim27Q62158 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Trim27Q62158 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim27Q62158 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
Trim27Q62158 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC19.65■□□□□ 0.74
Trim27Q62158 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Trim27Q62158 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim27Q62158 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Trim27Q62158 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
Trim27Q62158 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trim27Q62158 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.74
Trim27Q62158 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC19.64■□□□□ 0.74
Trim27Q62158 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trim27Q62158 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
Trim27Q62158 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim27Q62158 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim27Q62158 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC19.64■□□□□ 0.73
Trim27Q62158 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC19.64■□□□□ 0.73
Trim27Q62158 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim27Q62158 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim27Q62158 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Trim27Q62158 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC19.64■□□□□ 0.73
Trim27Q62158 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC19.64■□□□□ 0.73
Trim27Q62158 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim27Q62158 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trim27Q62158 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim27Q62158 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Trim27Q62158 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim27Q62158 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim27Q62158 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim27Q62158 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim27Q62158 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC19.63■□□□□ 0.73
Trim27Q62158 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Trim27Q62158 Rprl3-201ENSMUST00000157400 290 ntBASIC19.63■□□□□ 0.73
Trim27Q62158 Gm44454-201ENSMUST00000198541 138 ntBASIC19.63■□□□□ 0.73
Trim27Q62158 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC19.63■□□□□ 0.73
Trim27Q62158 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim27Q62158 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim27Q62158 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC19.63■□□□□ 0.73
Trim27Q62158 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim27Q62158 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim27Q62158 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim27Q62158 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Trim27Q62158 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Gm6257-201ENSMUST00000163864 910 ntBASIC19.62■□□□□ 0.73
Trim27Q62158 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC19.62■□□□□ 0.73
Trim27Q62158 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC19.62■□□□□ 0.73
Trim27Q62158 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC19.62■□□□□ 0.73
Trim27Q62158 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.62■□□□□ 0.73
Trim27Q62158 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC19.62■□□□□ 0.73
Trim27Q62158 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC19.62■□□□□ 0.73
Trim27Q62158 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim27Q62158 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms