Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Gm15442-201ENSMUST00000117905 1527 ntBASIC17.66■□□□□ 0.42
CtcfQ61164 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC17.65■□□□□ 0.42
CtcfQ61164 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC17.65■□□□□ 0.42
CtcfQ61164 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
CtcfQ61164 Gm14464-201ENSMUST00000119658 1254 ntBASIC17.65■□□□□ 0.42
CtcfQ61164 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.65■□□□□ 0.42
CtcfQ61164 Gm43799-201ENSMUST00000201845 579 ntBASIC17.65■□□□□ 0.42
CtcfQ61164 Spcs1-207ENSMUST00000228767 1008 ntBASIC17.65■□□□□ 0.42
CtcfQ61164 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CtcfQ61164 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC17.65■□□□□ 0.42
CtcfQ61164 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CtcfQ61164 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.64■□□□□ 0.42
CtcfQ61164 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
CtcfQ61164 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CtcfQ61164 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CtcfQ61164 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CtcfQ61164 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CtcfQ61164 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC17.64■□□□□ 0.41
CtcfQ61164 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC17.64■□□□□ 0.41
CtcfQ61164 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CtcfQ61164 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CtcfQ61164 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CtcfQ61164 Wnt10b-206ENSMUST00000228546 2709 ntBASIC17.64■□□□□ 0.41
CtcfQ61164 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC17.64■□□□□ 0.41
CtcfQ61164 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CtcfQ61164 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CtcfQ61164 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CtcfQ61164 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CtcfQ61164 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CtcfQ61164 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CtcfQ61164 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CtcfQ61164 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CtcfQ61164 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CtcfQ61164 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CtcfQ61164 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CtcfQ61164 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CtcfQ61164 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
CtcfQ61164 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC17.63■□□□□ 0.41
CtcfQ61164 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.63■□□□□ 0.41
CtcfQ61164 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC17.63■□□□□ 0.41
CtcfQ61164 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC17.63■□□□□ 0.41
CtcfQ61164 Gm18115-201ENSMUST00000221209 621 ntBASIC17.63■□□□□ 0.41
CtcfQ61164 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.63■□□□□ 0.41
CtcfQ61164 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CtcfQ61164 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CtcfQ61164 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CtcfQ61164 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CtcfQ61164 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CtcfQ61164 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CtcfQ61164 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CtcfQ61164 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CtcfQ61164 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CtcfQ61164 Gm42473-201ENSMUST00000201056 2291 ntBASIC17.63■□□□□ 0.41
CtcfQ61164 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CtcfQ61164 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CtcfQ61164 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CtcfQ61164 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CtcfQ61164 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
CtcfQ61164 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CtcfQ61164 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CtcfQ61164 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CtcfQ61164 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CtcfQ61164 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CtcfQ61164 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CtcfQ61164 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CtcfQ61164 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CtcfQ61164 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CtcfQ61164 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC17.62■□□□□ 0.41
CtcfQ61164 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CtcfQ61164 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CtcfQ61164 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CtcfQ61164 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
CtcfQ61164 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CtcfQ61164 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CtcfQ61164 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CtcfQ61164 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CtcfQ61164 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.61■□□□□ 0.41
CtcfQ61164 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17.61■□□□□ 0.41
CtcfQ61164 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms