Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Ptchd3Q0EEE2 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ptchd3Q0EEE2 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ptchd3Q0EEE2 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ptchd3Q0EEE2 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ptchd3Q0EEE2 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Ptchd3Q0EEE2 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ptchd3Q0EEE2 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ptchd3Q0EEE2 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Ptchd3Q0EEE2 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ptchd3Q0EEE2 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ptchd3Q0EEE2 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC15.51■□□□□ 0.07
Ptchd3Q0EEE2 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ptchd3Q0EEE2 Sybu-209ENSMUST00000228639 4113 ntBASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Ptprs-211ENSMUST00000223859 5588 ntBASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ptchd3Q0EEE2 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ptchd3Q0EEE2 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ptchd3Q0EEE2 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ptchd3Q0EEE2 Gfra2-202ENSMUST00000227633 1480 ntBASIC15.47■□□□□ 0.07
Ptchd3Q0EEE2 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ptchd3Q0EEE2 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ptchd3Q0EEE2 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ptchd3Q0EEE2 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ptchd3Q0EEE2 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC15.47■□□□□ 0.07
Ptchd3Q0EEE2 Gm11539-201ENSMUST00000119837 557 ntBASIC15.47■□□□□ 0.07
Ptchd3Q0EEE2 Gm13436-201ENSMUST00000120418 567 ntBASIC15.47■□□□□ 0.07
Ptchd3Q0EEE2 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC15.47■□□□□ 0.07
Ptchd3Q0EEE2 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Ptchd3Q0EEE2 Mir6982-201ENSMUST00000184354 68 ntBASIC15.47■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms