Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC13.63□□□□□ -0.23
Col8a1Q00780 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col8a1Q00780 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col8a1Q00780 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
Col8a1Q00780 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC13.62□□□□□ -0.23
Col8a1Q00780 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col8a1Q00780 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col8a1Q00780 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC13.62□□□□□ -0.23
Col8a1Q00780 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC13.62□□□□□ -0.23
Col8a1Q00780 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col8a1Q00780 Gm13616-201ENSMUST00000120600 222 ntBASIC13.62□□□□□ -0.23
Col8a1Q00780 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col8a1Q00780 Gm17271-201ENSMUST00000165535 355 ntBASIC13.62□□□□□ -0.23
Col8a1Q00780 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC13.62□□□□□ -0.23
Col8a1Q00780 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC13.62□□□□□ -0.23
Col8a1Q00780 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC13.62□□□□□ -0.23
Col8a1Q00780 AC159106.1-201ENSMUST00000224421 690 ntBASIC13.62□□□□□ -0.23
Col8a1Q00780 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Col8a1Q00780 Gm8396-201ENSMUST00000057361 823 ntBASIC13.62□□□□□ -0.23
Col8a1Q00780 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col8a1Q00780 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Col8a1Q00780 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col8a1Q00780 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC13.62□□□□□ -0.23
Col8a1Q00780 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col8a1Q00780 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Col8a1Q00780 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col8a1Q00780 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Col8a1Q00780 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Col8a1Q00780 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC13.61□□□□□ -0.23
Col8a1Q00780 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC13.61□□□□□ -0.23
Col8a1Q00780 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Gm5745-201ENSMUST00000183748 313 ntBASIC13.61□□□□□ -0.23
Col8a1Q00780 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Gm37171-201ENSMUST00000192636 1185 ntBASIC13.61□□□□□ -0.23
Col8a1Q00780 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC13.61□□□□□ -0.23
Col8a1Q00780 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Col8a1Q00780 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC13.61□□□□□ -0.23
Col8a1Q00780 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Col8a1Q00780 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col8a1Q00780 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC13.6□□□□□ -0.23
Col8a1Q00780 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC13.6□□□□□ -0.23
Col8a1Q00780 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Col8a1Q00780 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Col8a1Q00780 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC13.6□□□□□ -0.23
Col8a1Q00780 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC13.6□□□□□ -0.23
Col8a1Q00780 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC13.6□□□□□ -0.23
Col8a1Q00780 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC13.6□□□□□ -0.23
Col8a1Q00780 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Col8a1Q00780 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Col8a1Q00780 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Col8a1Q00780 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Col8a1Q00780 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col8a1Q00780 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC13.59□□□□□ -0.23
Col8a1Q00780 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms