Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Rfx1P48377 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC19.18■□□□□ 0.66
Rfx1P48377 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC19.17■□□□□ 0.66
Rfx1P48377 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Rfx1P48377 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Rfx1P48377 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC19.17■□□□□ 0.66
Rfx1P48377 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.17■□□□□ 0.66
Rfx1P48377 CT025689.6-201ENSMUST00000224991 1104 ntBASIC19.17■□□□□ 0.66
Rfx1P48377 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.17■□□□□ 0.66
Rfx1P48377 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Rfx1P48377 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Rfx1P48377 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Rfx1P48377 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rfx1P48377 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Rfx1P48377 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Gm715-201ENSMUST00000117865 831 ntBASIC19.16■□□□□ 0.66
Rfx1P48377 Gm11539-201ENSMUST00000119837 557 ntBASIC19.16■□□□□ 0.66
Rfx1P48377 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.16■□□□□ 0.66
Rfx1P48377 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC19.16■□□□□ 0.66
Rfx1P48377 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rfx1P48377 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Rfx1P48377 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Rfx1P48377 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC19.15■□□□□ 0.66
Rfx1P48377 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Rfx1P48377 Gm18421-201ENSMUST00000204122 625 ntBASIC19.15■□□□□ 0.66
Rfx1P48377 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC19.15■□□□□ 0.66
Rfx1P48377 Odf3b-204ENSMUST00000227834 930 ntBASIC19.15■□□□□ 0.66
Rfx1P48377 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC19.15■□□□□ 0.66
Rfx1P48377 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Rfx1P48377 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rfx1P48377 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Rfx1P48377 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Rfx1P48377 Rbfox2-206ENSMUST00000227314 1810 ntBASIC19.14■□□□□ 0.65
Rfx1P48377 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Rfx1P48377 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Gm13168-201ENSMUST00000121771 632 ntBASIC19.14■□□□□ 0.65
Rfx1P48377 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC19.14■□□□□ 0.65
Rfx1P48377 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Gm36967-201ENSMUST00000193814 266 ntBASIC19.14■□□□□ 0.65
Rfx1P48377 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
Rfx1P48377 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms