Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdx2P43241 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdx2P43241 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdx2P43241 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Cdx2P43241 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC15.17■□□□□ 0.02
Cdx2P43241 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Cdx2P43241 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC15.17■□□□□ 0.02
Cdx2P43241 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdx2P43241 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC15.17■□□□□ 0.02
Cdx2P43241 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
Cdx2P43241 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC15.17■□□□□ 0.02
Cdx2P43241 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Cdx2P43241 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdx2P43241 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Cdx2P43241 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Cdx2P43241 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC15.16■□□□□ 0.02
Cdx2P43241 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC15.16■□□□□ 0.02
Cdx2P43241 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC15.16■□□□□ 0.02
Cdx2P43241 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Gm11025-201ENSMUST00000140773 466 ntBASIC15.16■□□□□ 0.02
Cdx2P43241 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC15.16■□□□□ 0.02
Cdx2P43241 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC15.16■□□□□ 0.02
Cdx2P43241 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC15.16■□□□□ 0.02
Cdx2P43241 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Cdx2P43241 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC15.16■□□□□ 0.02
Cdx2P43241 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC15.16■□□□□ 0.02
Cdx2P43241 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC15.16■□□□□ 0.02
Cdx2P43241 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdx2P43241 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC15.15■□□□□ 0.02
Cdx2P43241 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx2P43241 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Cdx2P43241 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx2P43241 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Cdx2P43241 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC15.15■□□□□ 0.02
Cdx2P43241 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx2P43241 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC15.15■□□□□ 0.02
Cdx2P43241 Gm44492-201ENSMUST00000197012 141 ntBASIC15.15■□□□□ 0.02
Cdx2P43241 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC15.15■□□□□ 0.02
Cdx2P43241 Gm7787-201ENSMUST00000216858 688 ntBASIC15.15■□□□□ 0.02
Cdx2P43241 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx2P43241 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx2P43241 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx2P43241 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx2P43241 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx2P43241 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx2P43241 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
Cdx2P43241 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx2P43241 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
Cdx2P43241 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC15.14■□□□□ 0.01
Cdx2P43241 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Cdx2P43241 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Cdx2P43241 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 AC124549.3-201ENSMUST00000225541 367 ntBASIC15.14■□□□□ 0.01
Cdx2P43241 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx2P43241 Gm42900-201ENSMUST00000197184 2167 ntBASIC15.14■□□□□ 0.01
Cdx2P43241 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
Cdx2P43241 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx2P43241 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx2P43241 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx2P43241 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx2P43241 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx2P43241 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx2P43241 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx2P43241 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC15.13■□□□□ 0.01
Cdx2P43241 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC15.13■□□□□ 0.01
Cdx2P43241 AC154572.2-201ENSMUST00000225105 997 ntBASIC15.13■□□□□ 0.01
Cdx2P43241 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx2P43241 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx2P43241 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx2P43241 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms