Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm25144-201ENSMUST00000179561 110 ntBASIC21.2■□□□□ 0.98
Col18a1P39061 Gm25352-201ENSMUST00000179815 110 ntBASIC21.2■□□□□ 0.98
Col18a1P39061 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Col18a1P39061 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col18a1P39061 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col18a1P39061 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Col18a1P39061 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Col18a1P39061 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col18a1P39061 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Col18a1P39061 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col18a1P39061 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC21.19■□□□□ 0.98
Col18a1P39061 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col18a1P39061 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Col18a1P39061 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col18a1P39061 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Col18a1P39061 Gm7775-201ENSMUST00000218871 853 ntBASIC21.19■□□□□ 0.98
Col18a1P39061 Gm6888-201ENSMUST00000221983 706 ntBASIC21.19■□□□□ 0.98
Col18a1P39061 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC21.19■□□□□ 0.98
Col18a1P39061 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col18a1P39061 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC21.19■□□□□ 0.98
Col18a1P39061 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Col18a1P39061 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col18a1P39061 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col18a1P39061 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col18a1P39061 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC21.18■□□□□ 0.98
Col18a1P39061 Gm6912-201ENSMUST00000117218 544 ntBASIC21.18■□□□□ 0.98
Col18a1P39061 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC21.18■□□□□ 0.98
Col18a1P39061 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col18a1P39061 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC21.18■□□□□ 0.98
Col18a1P39061 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col18a1P39061 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Col18a1P39061 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Col18a1P39061 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col18a1P39061 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col18a1P39061 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC21.18■□□□□ 0.98
Col18a1P39061 Gm7286-201ENSMUST00000182691 1007 ntBASIC21.18■□□□□ 0.98
Col18a1P39061 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col18a1P39061 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
Col18a1P39061 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col18a1P39061 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col18a1P39061 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC21.17■□□□□ 0.98
Col18a1P39061 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col18a1P39061 Gm18187-201ENSMUST00000196476 984 ntBASIC21.17■□□□□ 0.98
Col18a1P39061 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC21.17■□□□□ 0.98
Col18a1P39061 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col18a1P39061 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col18a1P39061 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col18a1P39061 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col18a1P39061 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col18a1P39061 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col18a1P39061 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col18a1P39061 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC21.16■□□□□ 0.98
Col18a1P39061 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col18a1P39061 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col18a1P39061 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Col18a1P39061 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col18a1P39061 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col18a1P39061 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col18a1P39061 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col18a1P39061 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col18a1P39061 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Col18a1P39061 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC21.16■□□□□ 0.98
Col18a1P39061 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col18a1P39061 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC21.16■□□□□ 0.98
Col18a1P39061 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col18a1P39061 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col18a1P39061 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC21.15■□□□□ 0.98
Col18a1P39061 AC130669.1-201ENSMUST00000228537 1672 ntBASIC21.15■□□□□ 0.98
Col18a1P39061 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
Col18a1P39061 Gm9063-201ENSMUST00000223299 582 ntBASIC21.15■□□□□ 0.98
Col18a1P39061 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Col18a1P39061 Gm25857-201ENSMUST00000082788 129 ntBASIC21.15■□□□□ 0.98
Col18a1P39061 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Col18a1P39061 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC21.15■□□□□ 0.98
Col18a1P39061 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col18a1P39061 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC21.14■□□□□ 0.98
Col18a1P39061 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col18a1P39061 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col18a1P39061 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col18a1P39061 Gm3365-201ENSMUST00000216296 1480 ntBASIC21.14■□□□□ 0.98
Col18a1P39061 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms