Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC13.2□□□□□ -0.3
Sdc1P18828 Gm11927-201ENSMUST00000118472 759 ntBASIC13.2□□□□□ -0.3
Sdc1P18828 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sdc1P18828 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
Sdc1P18828 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC13.2□□□□□ -0.3
Sdc1P18828 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC13.2□□□□□ -0.3
Sdc1P18828 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sdc1P18828 Mtag2-201ENSMUST00000058665 714 ntBASIC13.2□□□□□ -0.3
Sdc1P18828 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sdc1P18828 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC13.2□□□□□ -0.3
Sdc1P18828 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sdc1P18828 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sdc1P18828 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sdc1P18828 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC13.2□□□□□ -0.3
Sdc1P18828 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sdc1P18828 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC13.2□□□□□ -0.3
Sdc1P18828 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sdc1P18828 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sdc1P18828 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sdc1P18828 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sdc1P18828 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Sdc1P18828 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC13.19□□□□□ -0.3
Sdc1P18828 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Sdc1P18828 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Sdc1P18828 Gm12821-201ENSMUST00000120022 600 ntBASIC13.19□□□□□ -0.3
Sdc1P18828 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC13.19□□□□□ -0.3
Sdc1P18828 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC13.19□□□□□ -0.3
Sdc1P18828 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Sdc1P18828 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Gm37728-201ENSMUST00000195025 2292 ntBASIC13.19□□□□□ -0.3
Sdc1P18828 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC13.19□□□□□ -0.3
Sdc1P18828 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Sdc1P18828 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sdc1P18828 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Sdc1P18828 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC13.18□□□□□ -0.3
Sdc1P18828 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Sdc1P18828 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC13.18□□□□□ -0.3
Sdc1P18828 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC13.18□□□□□ -0.3
Sdc1P18828 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
Sdc1P18828 Gm5408-201ENSMUST00000197998 747 ntBASIC13.18□□□□□ -0.3
Sdc1P18828 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC13.18□□□□□ -0.3
Sdc1P18828 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC13.18□□□□□ -0.3
Sdc1P18828 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Sdc1P18828 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Sdc1P18828 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sdc1P18828 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Sdc1P18828 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
Sdc1P18828 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sdc1P18828 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Sdc1P18828 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms