Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col1a1P11087 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col1a1P11087 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col1a1P11087 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC18.62■□□□□ 0.57
Col1a1P11087 AC140397.2-201ENSMUST00000224213 834 ntBASIC18.62■□□□□ 0.57
Col1a1P11087 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Col1a1P11087 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col1a1P11087 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col1a1P11087 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col1a1P11087 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
Col1a1P11087 Fgf17-202ENSMUST00000227123 1336 ntBASIC18.62■□□□□ 0.57
Col1a1P11087 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Col1a1P11087 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC18.61■□□□□ 0.57
Col1a1P11087 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC18.61■□□□□ 0.57
Col1a1P11087 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC18.61■□□□□ 0.57
Col1a1P11087 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Col1a1P11087 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col1a1P11087 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Col1a1P11087 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
Col1a1P11087 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC18.6■□□□□ 0.57
Col1a1P11087 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col1a1P11087 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col1a1P11087 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC18.6■□□□□ 0.57
Col1a1P11087 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC18.6■□□□□ 0.57
Col1a1P11087 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col1a1P11087 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col1a1P11087 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col1a1P11087 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col1a1P11087 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Col1a1P11087 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col1a1P11087 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col1a1P11087 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Col1a1P11087 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
Col1a1P11087 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC18.59■□□□□ 0.57
Col1a1P11087 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Col1a1P11087 Gm18246-201ENSMUST00000221023 728 ntBASIC18.59■□□□□ 0.57
Col1a1P11087 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Col1a1P11087 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Col1a1P11087 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 Gm8839-201ENSMUST00000121279 1645 ntBASIC18.59■□□□□ 0.57
Col1a1P11087 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC18.59■□□□□ 0.57
Col1a1P11087 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Col1a1P11087 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col1a1P11087 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC18.59■□□□□ 0.57
Col1a1P11087 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC18.58■□□□□ 0.57
Col1a1P11087 Rpph1-201ENSMUST00000175096 319 ntBASIC18.58■□□□□ 0.57
Col1a1P11087 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Col1a1P11087 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Col1a1P11087 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Col1a1P11087 AC127302.2-201ENSMUST00000215212 268 ntBASIC18.58■□□□□ 0.57
Col1a1P11087 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col1a1P11087 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col1a1P11087 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col1a1P11087 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col1a1P11087 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
Col1a1P11087 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col1a1P11087 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col1a1P11087 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC18.58■□□□□ 0.56
Col1a1P11087 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.58■□□□□ 0.56
Col1a1P11087 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col1a1P11087 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
Col1a1P11087 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col1a1P11087 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col1a1P11087 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col1a1P11087 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC18.58■□□□□ 0.56
Col1a1P11087 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC18.58■□□□□ 0.56
Col1a1P11087 Gm20553-201ENSMUST00000204205 844 ntBASIC18.58■□□□□ 0.56
Col1a1P11087 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col1a1P11087 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col1a1P11087 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col1a1P11087 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col1a1P11087 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col1a1P11087 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col1a1P11087 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col1a1P11087 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms