Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Ighv6-1-201ENSMUST00000193612 343 ntBASIC17.44■□□□□ 0.38
Chmp6P0C0A3 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chmp6P0C0A3 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC17.43■□□□□ 0.38
Chmp6P0C0A3 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Gm10459-201ENSMUST00000202708 1155 ntBASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Otx2os1-206ENSMUST00000228153 787 ntBASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.42■□□□□ 0.38
Chmp6P0C0A3 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Gm15794-201ENSMUST00000120182 631 ntBASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Olfr129-201ENSMUST00000122318 993 ntBASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 AC125350.1-201ENSMUST00000225115 903 ntBASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chmp6P0C0A3 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Chmp6P0C0A3 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Chmp6P0C0A3 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Chmp6P0C0A3 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Chmp6P0C0A3 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Chmp6P0C0A3 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Chmp6P0C0A3 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Chmp6P0C0A3 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
Chmp6P0C0A3 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms