Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Col5a1O88207 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC14.34□□□□□ -0.11
Col5a1O88207 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
Col5a1O88207 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC14.34□□□□□ -0.11
Col5a1O88207 Gm18622-201ENSMUST00000219361 595 ntBASIC14.34□□□□□ -0.11
Col5a1O88207 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC14.34□□□□□ -0.11
Col5a1O88207 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Col5a1O88207 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Col5a1O88207 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col5a1O88207 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC14.34□□□□□ -0.11
Col5a1O88207 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Col5a1O88207 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Col5a1O88207 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC14.34□□□□□ -0.11
Col5a1O88207 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC14.34□□□□□ -0.11
Col5a1O88207 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Gm11185-201ENSMUST00000117732 1007 ntBASIC14.34□□□□□ -0.11
Col5a1O88207 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Gm27622-201ENSMUST00000183779 60 ntBASIC14.34□□□□□ -0.11
Col5a1O88207 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC14.34□□□□□ -0.11
Col5a1O88207 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC14.34□□□□□ -0.11
Col5a1O88207 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC14.34□□□□□ -0.11
Col5a1O88207 AC131709.1-201ENSMUST00000224731 1180 ntBASIC14.34□□□□□ -0.11
Col5a1O88207 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Col5a1O88207 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col5a1O88207 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC14.34□□□□□ -0.11
Col5a1O88207 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
Col5a1O88207 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
Col5a1O88207 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col5a1O88207 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col5a1O88207 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col5a1O88207 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col5a1O88207 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC14.33□□□□□ -0.12
Col5a1O88207 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC14.33□□□□□ -0.12
Col5a1O88207 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC14.33□□□□□ -0.12
Col5a1O88207 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC14.33□□□□□ -0.12
Col5a1O88207 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col5a1O88207 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col5a1O88207 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col5a1O88207 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Col5a1O88207 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC14.33□□□□□ -0.12
Col5a1O88207 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Col5a1O88207 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col5a1O88207 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col5a1O88207 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Col5a1O88207 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Col5a1O88207 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC14.32□□□□□ -0.12
Col5a1O88207 Gm11745-201ENSMUST00000121669 448 ntBASIC14.32□□□□□ -0.12
Col5a1O88207 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Col5a1O88207 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col5a1O88207 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.32□□□□□ -0.12
Col5a1O88207 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Col5a1O88207 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Col5a1O88207 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms