Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Gm25990-201ENSMUST00000102440 86 ntBASIC16.46■□□□□ 0.23
Sdc4O35988 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC16.46■□□□□ 0.23
Sdc4O35988 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC16.46■□□□□ 0.23
Sdc4O35988 AC154757.1-201ENSMUST00000228289 336 ntBASIC16.46■□□□□ 0.23
Sdc4O35988 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sdc4O35988 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Sdc4O35988 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC16.46■□□□□ 0.23
Sdc4O35988 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.22
Sdc4O35988 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
Sdc4O35988 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Sdc4O35988 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Sdc4O35988 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC16.45■□□□□ 0.22
Sdc4O35988 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC16.45■□□□□ 0.22
Sdc4O35988 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Sdc4O35988 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC16.45■□□□□ 0.22
Sdc4O35988 Mir5131-201ENSMUST00000175426 93 ntBASIC16.45■□□□□ 0.22
Sdc4O35988 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
Sdc4O35988 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC16.45■□□□□ 0.22
Sdc4O35988 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.45■□□□□ 0.22
Sdc4O35988 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC16.45■□□□□ 0.22
Sdc4O35988 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC16.45■□□□□ 0.22
Sdc4O35988 AC138767.1-201ENSMUST00000222661 415 ntBASIC16.45■□□□□ 0.22
Sdc4O35988 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC16.45■□□□□ 0.22
Sdc4O35988 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Sdc4O35988 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Sdc4O35988 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sdc4O35988 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Sdc4O35988 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC16.44■□□□□ 0.22
Sdc4O35988 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC16.44■□□□□ 0.22
Sdc4O35988 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC16.44■□□□□ 0.22
Sdc4O35988 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC16.44■□□□□ 0.22
Sdc4O35988 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sdc4O35988 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sdc4O35988 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC16.43■□□□□ 0.22
Sdc4O35988 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Sdc4O35988 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Sdc4O35988 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
Sdc4O35988 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sdc4O35988 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC16.43■□□□□ 0.22
Sdc4O35988 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sdc4O35988 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sdc4O35988 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sdc4O35988 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC16.43■□□□□ 0.22
Sdc4O35988 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Sdc4O35988 Gm7230-201ENSMUST00000173026 815 ntBASIC16.43■□□□□ 0.22
Sdc4O35988 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Sdc4O35988 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.43■□□□□ 0.22
Sdc4O35988 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Sdc4O35988 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Sdc4O35988 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Sdc4O35988 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Sdc4O35988 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms