Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC39Q9UFE4 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC39Q9UFE4 AC008413.1-201ENST00000511864 177 ntBASIC2.45□□□□□ -2.02
CCDC39Q9UFE4 uc_338.20-201ENST00000621563 178 ntBASIC2.45□□□□□ -2.02
CCDC39Q9UFE4 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC39Q9UFE4 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
CCDC39Q9UFE4 SNORD115-37-201ENST00000363768 82 ntBASIC2.44□□□□□ -2.02
CCDC39Q9UFE4 Y_RNA.173-201ENST00000363776 113 ntBASIC2.44□□□□□ -2.02
CCDC39Q9UFE4 RNU6-865P-201ENST00000364772 107 ntBASIC2.44□□□□□ -2.02
CCDC39Q9UFE4 Y_RNA.545-201ENST00000384652 105 ntBASIC2.44□□□□□ -2.02
CCDC39Q9UFE4 SPINT5P-201ENST00000448174 155 ntBASIC2.44□□□□□ -2.02
CCDC39Q9UFE4 SNORD67.1-201ENST00000516618 108 ntBASIC2.44□□□□□ -2.02
CCDC39Q9UFE4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC39Q9UFE4 AC069114.2-201ENST00000604699 304 ntBASIC2.44□□□□□ -2.02
CCDC39Q9UFE4 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
CCDC39Q9UFE4 RNU4-82P-201ENST00000362443 140 ntBASIC2.43□□□□□ -2.02
CCDC39Q9UFE4 MIR181B2-201ENST00000385004 89 ntBASIC2.43□□□□□ -2.02
CCDC39Q9UFE4 AC093850.1-201ENST00000454121 251 ntBASIC2.43□□□□□ -2.02
CCDC39Q9UFE4 SNORD123-201ENST00000459473 70 ntBASIC2.43□□□□□ -2.02
CCDC39Q9UFE4 SCARNA16.3-201ENST00000516595 184 ntBASIC2.43□□□□□ -2.02
CCDC39Q9UFE4 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC39Q9UFE4 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC39Q9UFE4 AC005786.1-201ENST00000588553 154 ntBASIC2.43□□□□□ -2.02
CCDC39Q9UFE4 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC39Q9UFE4 FAS-AS1.1-201ENST00000615327 126 ntBASIC2.43□□□□□ -2.02
CCDC39Q9UFE4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC39Q9UFE4 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.42□□□□□ -2.02
CCDC39Q9UFE4 RNU6-315P-201ENST00000362666 107 ntBASIC2.42□□□□□ -2.02
CCDC39Q9UFE4 SNORA16B-201ENST00000364674 135 ntBASIC2.42□□□□□ -2.02
CCDC39Q9UFE4 MIR518A2-201ENST00000384966 87 ntBASIC2.42□□□□□ -2.02
CCDC39Q9UFE4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
CCDC39Q9UFE4 RNU6-1321P-201ENST00000390905 107 ntBASIC2.42□□□□□ -2.02
CCDC39Q9UFE4 AC004223.1-201ENST00000479840 271 ntBASIC2.42□□□□□ -2.02
CCDC39Q9UFE4 RNU2-19P-201ENST00000517288 84 ntBASIC2.42□□□□□ -2.02
CCDC39Q9UFE4 MIR8055-201ENST00000610739 97 ntBASIC2.42□□□□□ -2.02
CCDC39Q9UFE4 MIR6873-201ENST00000622788 63 ntBASIC2.42□□□□□ -2.02
CCDC39Q9UFE4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC39Q9UFE4 RNU6-1086P-201ENST00000410930 100 ntBASIC2.41□□□□□ -2.02
CCDC39Q9UFE4 AC055731.1-201ENST00000474387 401 ntBASIC2.41□□□□□ -2.02
CCDC39Q9UFE4 AC114801.3-201ENST00000510231 177 ntBASIC2.41□□□□□ -2.02
CCDC39Q9UFE4 RNU7-79P-201ENST00000516082 62 ntBASIC2.41□□□□□ -2.02
CCDC39Q9UFE4 RNU7-153P-201ENST00000516455 62 ntBASIC2.41□□□□□ -2.02
CCDC39Q9UFE4 MIR5094-201ENST00000578766 85 ntBASIC2.41□□□□□ -2.02
CCDC39Q9UFE4 AC105081.1-201ENST00000617727 106 ntBASIC2.41□□□□□ -2.02
CCDC39Q9UFE4 AC012676.2-201ENST00000619258 186 ntBASIC2.41□□□□□ -2.02
CCDC39Q9UFE4 MIR8065-201ENST00000620577 100 ntBASIC2.41□□□□□ -2.02
CCDC39Q9UFE4 MIR6852-201ENST00000621699 66 ntBASIC2.41□□□□□ -2.02
CCDC39Q9UFE4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC39Q9UFE4 AL359851.1-201ENST00000569460 4997 ntBASIC2.4□□□□□ -2.02
CCDC39Q9UFE4 Y_RNA.537-201ENST00000384626 109 ntBASIC2.4□□□□□ -2.03
CCDC39Q9UFE4 RNU6-950P-201ENST00000384651 107 ntBASIC2.4□□□□□ -2.03
CCDC39Q9UFE4 RNU6-129P-201ENST00000391022 107 ntBASIC2.4□□□□□ -2.03
CCDC39Q9UFE4 AL356320.1-201ENST00000429616 163 ntBASIC2.4□□□□□ -2.03
CCDC39Q9UFE4 RNU6-523P-201ENST00000516304 54 ntBASIC2.4□□□□□ -2.03
CCDC39Q9UFE4 RNU7-137P-201ENST00000516788 62 ntBASIC2.4□□□□□ -2.03
CCDC39Q9UFE4 FAM106DP-201ENST00000586416 501 ntBASIC2.4□□□□□ -2.03
CCDC39Q9UFE4 RNU1-58P-201ENST00000362413 163 ntBASIC2.39□□□□□ -2.03
CCDC39Q9UFE4 RNU6-478P-201ENST00000363904 110 ntBASIC2.39□□□□□ -2.03
CCDC39Q9UFE4 RNU6-1031P-201ENST00000384773 107 ntBASIC2.39□□□□□ -2.03
CCDC39Q9UFE4 MIR526A1-201ENST00000384897 85 ntBASIC2.39□□□□□ -2.03
CCDC39Q9UFE4 RNU11-3P-201ENST00000391111 133 ntBASIC2.39□□□□□ -2.03
CCDC39Q9UFE4 SUMO2P12-201ENST00000405924 140 ntBASIC2.39□□□□□ -2.03
CCDC39Q9UFE4 Z98742.3-201ENST00000418637 326 ntBASIC2.39□□□□□ -2.03
CCDC39Q9UFE4 AC087499.7-201ENST00000441958 109 ntBASIC2.39□□□□□ -2.03
CCDC39Q9UFE4 RPS27P21-201ENST00000486977 252 ntBASIC2.39□□□□□ -2.03
CCDC39Q9UFE4 RN7SL274P-201ENST00000492268 272 ntBASIC2.39□□□□□ -2.03
CCDC39Q9UFE4 SNORA25.13-201ENST00000516395 103 ntBASIC2.39□□□□□ -2.03
CCDC39Q9UFE4 MTND5P40-201ENST00000559945 246 ntBASIC2.39□□□□□ -2.03
CCDC39Q9UFE4 MIR449A-201ENST00000362113 91 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 Y_RNA.57-201ENST00000362806 113 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 SNORD114-10-201ENST00000363409 72 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-590P-201ENST00000365039 107 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-480P-201ENST00000384332 107 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 SNORD38.2-201ENST00000384470 69 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 SNORA2B-201ENST00000384583 137 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-447P-201ENST00000410293 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-1118P-201ENST00000410382 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-1076P-201ENST00000410397 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-355P-201ENST00000410427 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-791P-201ENST00000410467 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-519P-201ENST00000410590 108 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-705P-201ENST00000410601 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-1100P-201ENST00000410691 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-860P-201ENST00000410860 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-1217P-201ENST00000411276 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU6-785P-201ENST00000411324 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 BX510359.4-201ENST00000423750 193 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 RNU7-48P-201ENST00000458875 63 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 snoU13.16-201ENST00000459350 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 U6.90-201ENST00000614007 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 U6.70-201ENST00000620287 104 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 Y_RNA.788-201ENST00000622394 112 ntBASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC39Q9UFE4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC39Q9UFE4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC39Q9UFE4 Y_RNA.98-201ENST00000363109 102 ntBASIC2.37□□□□□ -2.03
CCDC39Q9UFE4 Y_RNA.168-201ENST00000363740 102 ntBASIC2.37□□□□□ -2.03
CCDC39Q9UFE4 RNA5SP465-201ENST00000391195 109 ntBASIC2.37□□□□□ -2.03
CCDC39Q9UFE4 MIR1236-201ENST00000408340 102 ntBASIC2.37□□□□□ -2.03
CCDC39Q9UFE4 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 227.7 ms