Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 7SK.13-201ENST00000622040 250 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.46□□□□□ -2.18
VSX1Q9NZR4 Y_RNA.35-201ENST00000362601 101 ntBASIC1.45□□□□□ -2.18
VSX1Q9NZR4 RNU6-755P-201ENST00000364400 103 ntBASIC1.45□□□□□ -2.18
VSX1Q9NZR4 MIR504-201ENST00000385065 83 ntBASIC1.45□□□□□ -2.18
VSX1Q9NZR4 MIR764-201ENST00000390811 85 ntBASIC1.45□□□□□ -2.18
VSX1Q9NZR4 MIR1912-201ENST00000410389 80 ntBASIC1.45□□□□□ -2.18
VSX1Q9NZR4 RNU6-1258P-201ENST00000516911 111 ntBASIC1.45□□□□□ -2.18
VSX1Q9NZR4 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
VSX1Q9NZR4 MIR103A2-201ENST00000362154 78 ntBASIC1.44□□□□□ -2.18
VSX1Q9NZR4 Y_RNA.85-201ENST00000363014 111 ntBASIC1.44□□□□□ -2.18
VSX1Q9NZR4 Y_RNA.362-201ENST00000365518 110 ntBASIC1.44□□□□□ -2.18
VSX1Q9NZR4 SNORD12C-201ENST00000386307 89 ntBASIC1.44□□□□□ -2.18
VSX1Q9NZR4 RNY4P18-201ENST00000391107 89 ntBASIC1.44□□□□□ -2.18
VSX1Q9NZR4 RNU6-613P-201ENST00000410412 108 ntBASIC1.44□□□□□ -2.18
VSX1Q9NZR4 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.44□□□□□ -2.18
VSX1Q9NZR4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.44□□□□□ -2.18
VSX1Q9NZR4 RPS27P16-201ENST00000425758 201 ntBASIC1.44□□□□□ -2.18
VSX1Q9NZR4 RNU7-35P-201ENST00000517174 62 ntBASIC1.44□□□□□ -2.18
VSX1Q9NZR4 AP000942.3-201ENST00000603702 160 ntBASIC1.44□□□□□ -2.18
VSX1Q9NZR4 MIR502-201ENST00000606349 86 ntBASIC1.44□□□□□ -2.18
VSX1Q9NZR4 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
VSX1Q9NZR4 Y_RNA.470-201ENST00000384307 117 ntBASIC1.43□□□□□ -2.18
VSX1Q9NZR4 MIR1302-7-201ENST00000408841 72 ntBASIC1.43□□□□□ -2.18
VSX1Q9NZR4 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.43□□□□□ -2.18
VSX1Q9NZR4 snoU13.2-201ENST00000459201 104 ntBASIC1.43□□□□□ -2.18
VSX1Q9NZR4 RNU6-165P-201ENST00000517170 99 ntBASIC1.43□□□□□ -2.18
VSX1Q9NZR4 AC022523.2-201ENST00000561045 150 ntBASIC1.43□□□□□ -2.18
VSX1Q9NZR4 MIR548AE2-201ENST00000583456 67 ntBASIC1.43□□□□□ -2.18
VSX1Q9NZR4 RNU6-94P-201ENST00000607728 107 ntBASIC1.43□□□□□ -2.18
VSX1Q9NZR4 AC087741.2-201ENST00000619415 172 ntBASIC1.43□□□□□ -2.18
VSX1Q9NZR4 AL161722.3-201ENST00000605789 2983 ntBASIC1.43□□□□□ -2.18
VSX1Q9NZR4 Y_RNA.507-201ENST00000384500 99 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 RNU6-447P-201ENST00000410293 104 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 RNU6-1118P-201ENST00000410382 104 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 RNU6-1076P-201ENST00000410397 104 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 RNU6-355P-201ENST00000410427 104 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 RNU6-791P-201ENST00000410467 104 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 RNU6-705P-201ENST00000410601 104 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 RNU6-1100P-201ENST00000410691 104 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 RNU6-860P-201ENST00000410860 104 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 RNU6-1217P-201ENST00000411276 104 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 RNU6-785P-201ENST00000411324 104 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.42□□□□□ -2.18
VSX1Q9NZR4 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 U6.90-201ENST00000614007 104 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 U6.70-201ENST00000620287 104 ntBASIC1.42□□□□□ -2.18
VSX1Q9NZR4 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.41□□□□□ -2.18
VSX1Q9NZR4 Y_RNA.323-201ENST00000365157 109 ntBASIC1.41□□□□□ -2.18
VSX1Q9NZR4 SNORA18-201ENST00000384416 132 ntBASIC1.41□□□□□ -2.18
VSX1Q9NZR4 MT-TI-201ENST00000387365 69 ntBASIC1.41□□□□□ -2.18
VSX1Q9NZR4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.41□□□□□ -2.18
VSX1Q9NZR4 MIR1185-1-201ENST00000408598 86 ntBASIC1.41□□□□□ -2.18
VSX1Q9NZR4 RNA5SP237-201ENST00000410414 113 ntBASIC1.41□□□□□ -2.18
VSX1Q9NZR4 FAM71BP1-201ENST00000604431 523 ntBASIC1.41□□□□□ -2.18
VSX1Q9NZR4 SEPT14P17-201ENST00000617978 177 ntBASIC1.41□□□□□ -2.18
VSX1Q9NZR4 AL162726.3-218ENST00000636401 95 ntBASIC1.41□□□□□ -2.18
VSX1Q9NZR4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
VSX1Q9NZR4 RNU6-363P-201ENST00000362895 105 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 SNORA25.3-201ENST00000363205 127 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 RNU6-1107P-201ENST00000364817 104 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 RNU6-580P-201ENST00000365159 107 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 SNORA22-201ENST00000383907 134 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 RNU6-1113P-201ENST00000384348 107 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 SNORA26.9-201ENST00000391322 122 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 MIR1302-5-201ENST00000408164 150 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 AC090844.1-201ENST00000422019 156 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 AC244023.1-201ENST00000426884 112 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 snoU13.25-201ENST00000458945 104 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 MIR4298-201ENST00000584380 73 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 AC242498.1-201ENST00000604134 111 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.4□□□□□ -2.19
VSX1Q9NZR4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
VSX1Q9NZR4 SNORD114-10-201ENST00000363409 72 ntBASIC1.39□□□□□ -2.19
VSX1Q9NZR4 Y_RNA.344-201ENST00000365381 112 ntBASIC1.39□□□□□ -2.19
VSX1Q9NZR4 SNORA80D-201ENST00000384488 135 ntBASIC1.39□□□□□ -2.19
VSX1Q9NZR4 AL591806.2-201ENST00000433122 173 ntBASIC1.39□□□□□ -2.19
VSX1Q9NZR4 RPS29P23-201ENST00000458635 123 ntBASIC1.39□□□□□ -2.19
VSX1Q9NZR4 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.39□□□□□ -2.19
VSX1Q9NZR4 PDCD5P2-201ENST00000507570 312 ntBASIC1.39□□□□□ -2.19
VSX1Q9NZR4 RNU7-79P-201ENST00000516082 62 ntBASIC1.39□□□□□ -2.19
VSX1Q9NZR4 SNORA25.15-201ENST00000516487 89 ntBASIC1.39□□□□□ -2.19
VSX1Q9NZR4 AC068339.1-201ENST00000526965 141 ntBASIC1.39□□□□□ -2.19
VSX1Q9NZR4 MIR5009-201ENST00000578736 100 ntBASIC1.39□□□□□ -2.19
VSX1Q9NZR4 MIR6516-201ENST00000630554 81 ntBASIC1.39□□□□□ -2.19
VSX1Q9NZR4 SNORA63.5-201ENST00000363548 123 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 Y_RNA.168-201ENST00000363740 102 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 MIR588-201ENST00000384900 83 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 MIR563-201ENST00000385080 79 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 MT-TF-201ENST00000387314 71 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 SNORD12-201ENST00000391002 90 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 AL591704.2-201ENST00000421658 181 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 MIR18B-201ENST00000454574 71 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 SNORD13-201ENST00000459299 104 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 RNU6-1018P-201ENST00000516577 106 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 BX248123.2-201ENST00000606318 124 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 AL662814.1-201ENST00000617364 121 ntBASIC1.38□□□□□ -2.19
VSX1Q9NZR4 Y_RNA.78-201ENST00000362970 110 ntBASIC1.37□□□□□ -2.19
VSX1Q9NZR4 RNU6-1014P-201ENST00000383940 103 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 218 ms