Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RNU11-2P-201ENST00000516898 142 ntBASIC1.49□□□□□ -2.17
TDP1Q9NUW8 RNU6-1258P-201ENST00000516911 111 ntBASIC1.49□□□□□ -2.17
TDP1Q9NUW8 AL157834.3-201ENST00000615543 103 ntBASIC1.49□□□□□ -2.17
TDP1Q9NUW8 SNORD38B-202ENST00000625943 69 ntBASIC1.49□□□□□ -2.17
TDP1Q9NUW8 MIR6516-201ENST00000630554 81 ntBASIC1.49□□□□□ -2.17
TDP1Q9NUW8 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.49□□□□□ -2.17
TDP1Q9NUW8 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.48□□□□□ -2.17
TDP1Q9NUW8 Y_RNA.171-201ENST00000363760 102 ntBASIC1.48□□□□□ -2.17
TDP1Q9NUW8 RNU6-392P-201ENST00000364926 101 ntBASIC1.48□□□□□ -2.17
TDP1Q9NUW8 Y_RNA.363-201ENST00000365529 113 ntBASIC1.48□□□□□ -2.17
TDP1Q9NUW8 MIR1263-201ENST00000408324 86 ntBASIC1.48□□□□□ -2.17
TDP1Q9NUW8 MIR1287-201ENST00000408492 90 ntBASIC1.48□□□□□ -2.17
TDP1Q9NUW8 AL512326.2-201ENST00000426359 151 ntBASIC1.48□□□□□ -2.17
TDP1Q9NUW8 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.48□□□□□ -2.17
TDP1Q9NUW8 RN7SKP179-201ENST00000516126 217 ntBASIC1.48□□□□□ -2.17
TDP1Q9NUW8 RNU6-62P-201ENST00000516526 102 ntBASIC1.48□□□□□ -2.17
TDP1Q9NUW8 Y_RNA.712-201ENST00000517011 92 ntBASIC1.48□□□□□ -2.17
TDP1Q9NUW8 AL161722.3-201ENST00000605789 2983 ntBASIC1.48□□□□□ -2.17
TDP1Q9NUW8 Y_RNA.354-201ENST00000365448 111 ntBASIC1.47□□□□□ -2.17
TDP1Q9NUW8 MIRLET7F2-201ENST00000385277 83 ntBASIC1.47□□□□□ -2.17
TDP1Q9NUW8 RNU6-1168P-201ENST00000390831 104 ntBASIC1.47□□□□□ -2.17
TDP1Q9NUW8 Y_RNA.630-201ENST00000411370 108 ntBASIC1.47□□□□□ -2.17
TDP1Q9NUW8 AC244023.1-201ENST00000426884 112 ntBASIC1.47□□□□□ -2.17
TDP1Q9NUW8 AC004812.1-201ENST00000540773 146 ntBASIC1.47□□□□□ -2.17
TDP1Q9NUW8 AC242498.1-201ENST00000604134 111 ntBASIC1.47□□□□□ -2.17
TDP1Q9NUW8 AL353770.2-201ENST00000620024 78 ntBASIC1.47□□□□□ -2.17
TDP1Q9NUW8 SNORD12C-201ENST00000386307 89 ntBASIC1.46□□□□□ -2.18
TDP1Q9NUW8 RNA5SP136-201ENST00000410906 107 ntBASIC1.46□□□□□ -2.18
TDP1Q9NUW8 RNU7-113P-201ENST00000459273 62 ntBASIC1.46□□□□□ -2.18
TDP1Q9NUW8 RNU6-479P-201ENST00000516348 105 ntBASIC1.46□□□□□ -2.18
TDP1Q9NUW8 AC025166.1-201ENST00000612411 163 ntBASIC1.46□□□□□ -2.18
TDP1Q9NUW8 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
TDP1Q9NUW8 RNU6-654P-201ENST00000364373 107 ntBASIC1.45□□□□□ -2.18
TDP1Q9NUW8 Y_RNA.531-201ENST00000384589 121 ntBASIC1.45□□□□□ -2.18
TDP1Q9NUW8 MT-TN-201ENST00000387400 73 ntBASIC1.45□□□□□ -2.18
TDP1Q9NUW8 RNU6-910P-201ENST00000390844 107 ntBASIC1.45□□□□□ -2.18
TDP1Q9NUW8 SNORA75.2-201ENST00000391138 150 ntBASIC1.45□□□□□ -2.18
TDP1Q9NUW8 SNORA75.3-201ENST00000391231 150 ntBASIC1.45□□□□□ -2.18
TDP1Q9NUW8 AC113410.1-201ENST00000505029 247 ntBASIC1.45□□□□□ -2.18
TDP1Q9NUW8 AC022523.2-201ENST00000561045 150 ntBASIC1.45□□□□□ -2.18
TDP1Q9NUW8 SEPT14P17-201ENST00000617978 177 ntBASIC1.45□□□□□ -2.18
TDP1Q9NUW8 MIR3914-2-201ENST00000637339 95 ntBASIC1.45□□□□□ -2.18
TDP1Q9NUW8 SNORD115-2-201ENST00000362842 82 ntBASIC1.44□□□□□ -2.18
TDP1Q9NUW8 SNORA25.9-201ENST00000365087 128 ntBASIC1.44□□□□□ -2.18
TDP1Q9NUW8 SNORD115-20-201ENST00000365099 82 ntBASIC1.44□□□□□ -2.18
TDP1Q9NUW8 Y_RNA.470-201ENST00000384307 117 ntBASIC1.44□□□□□ -2.18
TDP1Q9NUW8 Y_RNA.528-201ENST00000384575 108 ntBASIC1.44□□□□□ -2.18
TDP1Q9NUW8 RNU6-1104P-201ENST00000384723 104 ntBASIC1.44□□□□□ -2.18
TDP1Q9NUW8 MIR499A-201ENST00000384903 122 ntBASIC1.44□□□□□ -2.18
TDP1Q9NUW8 RNU6-1154P-201ENST00000391001 104 ntBASIC1.44□□□□□ -2.18
TDP1Q9NUW8 RNU6-613P-201ENST00000410412 108 ntBASIC1.44□□□□□ -2.18
TDP1Q9NUW8 MIR4264-201ENST00000583520 66 ntBASIC1.44□□□□□ -2.18
TDP1Q9NUW8 SNORA22C-201ENST00000384614 134 ntBASIC1.43□□□□□ -2.18
TDP1Q9NUW8 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.43□□□□□ -2.18
TDP1Q9NUW8 RNA5SP95-201ENST00000410319 137 ntBASIC1.43□□□□□ -2.18
TDP1Q9NUW8 RNU2-51P-201ENST00000410708 197 ntBASIC1.43□□□□□ -2.18
TDP1Q9NUW8 COX6CP6-201ENST00000490840 228 ntBASIC1.43□□□□□ -2.18
TDP1Q9NUW8 RNU6-313P-201ENST00000516317 112 ntBASIC1.43□□□□□ -2.18
TDP1Q9NUW8 AP000753.3-201ENST00000604083 169 ntBASIC1.43□□□□□ -2.18
TDP1Q9NUW8 MTND5P18-201ENST00000445624 1801 ntBASIC1.43□□□□□ -2.18
TDP1Q9NUW8 RNA5SP327-201ENST00000362494 101 ntBASIC1.42□□□□□ -2.18
TDP1Q9NUW8 Y_RNA.330-201ENST00000365230 109 ntBASIC1.42□□□□□ -2.18
TDP1Q9NUW8 MIR320A-201ENST00000385302 82 ntBASIC1.42□□□□□ -2.18
TDP1Q9NUW8 RNU6-205P-201ENST00000390858 107 ntBASIC1.42□□□□□ -2.18
TDP1Q9NUW8 SNORD79.1-201ENST00000516069 84 ntBASIC1.42□□□□□ -2.18
TDP1Q9NUW8 RNA5SP33-201ENST00000516687 98 ntBASIC1.42□□□□□ -2.18
TDP1Q9NUW8 RNA5SP205-201ENST00000364653 136 ntBASIC1.41□□□□□ -2.18
TDP1Q9NUW8 Y_RNA.346-201ENST00000365385 112 ntBASIC1.41□□□□□ -2.18
TDP1Q9NUW8 SNORA80D-201ENST00000384488 135 ntBASIC1.41□□□□□ -2.18
TDP1Q9NUW8 MT-TI-201ENST00000387365 69 ntBASIC1.41□□□□□ -2.18
TDP1Q9NUW8 AL591704.2-201ENST00000421658 181 ntBASIC1.41□□□□□ -2.18
TDP1Q9NUW8 RNU1-98P-201ENST00000458992 160 ntBASIC1.41□□□□□ -2.18
TDP1Q9NUW8 RNU7-21P-201ENST00000459430 62 ntBASIC1.41□□□□□ -2.18
TDP1Q9NUW8 SNORA70.22-201ENST00000517160 124 ntBASIC1.41□□□□□ -2.18
TDP1Q9NUW8 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.41□□□□□ -2.18
TDP1Q9NUW8 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.19
TDP1Q9NUW8 MIR377-201ENST00000362145 69 ntBASIC1.4□□□□□ -2.19
TDP1Q9NUW8 Y_RNA.198-201ENST00000364013 98 ntBASIC1.4□□□□□ -2.19
TDP1Q9NUW8 SNORD26-201ENST00000384147 75 ntBASIC1.4□□□□□ -2.19
TDP1Q9NUW8 RNU6-342P-201ENST00000384521 104 ntBASIC1.4□□□□□ -2.19
TDP1Q9NUW8 Y_RNA.563-201ENST00000384707 108 ntBASIC1.4□□□□□ -2.19
TDP1Q9NUW8 RPS29P23-201ENST00000458635 123 ntBASIC1.4□□□□□ -2.19
TDP1Q9NUW8 snoU13.2-201ENST00000459201 104 ntBASIC1.4□□□□□ -2.19
TDP1Q9NUW8 RPS23P4-201ENST00000487908 423 ntBASIC1.4□□□□□ -2.19
TDP1Q9NUW8 SNORD33.1-201ENST00000516213 88 ntBASIC1.4□□□□□ -2.19
TDP1Q9NUW8 MIR548AE2-201ENST00000583456 67 ntBASIC1.4□□□□□ -2.19
TDP1Q9NUW8 U6.95-201ENST00000636931 70 ntBASIC1.4□□□□□ -2.19
TDP1Q9NUW8 Y_RNA.213-201ENST00000364178 111 ntBASIC1.39□□□□□ -2.19
TDP1Q9NUW8 SNORA18-201ENST00000384416 132 ntBASIC1.39□□□□□ -2.19
TDP1Q9NUW8 RNU6-1081P-201ENST00000384537 107 ntBASIC1.39□□□□□ -2.19
TDP1Q9NUW8 MIR588-201ENST00000384900 83 ntBASIC1.39□□□□□ -2.19
TDP1Q9NUW8 MIR548I2-201ENST00000408348 149 ntBASIC1.39□□□□□ -2.19
TDP1Q9NUW8 RNU1-123P-201ENST00000458950 160 ntBASIC1.39□□□□□ -2.19
TDP1Q9NUW8 MIR6078-201ENST00000611069 100 ntBASIC1.39□□□□□ -2.19
TDP1Q9NUW8 MIR6740-201ENST00000618268 113 ntBASIC1.39□□□□□ -2.19
TDP1Q9NUW8 SNORA25-201ENST00000384384 134 ntBASIC1.38□□□□□ -2.19
TDP1Q9NUW8 RNU6-1237P-201ENST00000384777 107 ntBASIC1.38□□□□□ -2.19
TDP1Q9NUW8 MIR1276-201ENST00000408707 83 ntBASIC1.38□□□□□ -2.19
TDP1Q9NUW8 RNU7-62P-201ENST00000458856 62 ntBASIC1.38□□□□□ -2.19
TDP1Q9NUW8 AL359881.1-201ENST00000602916 267 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 170.9 ms