Protein–RNA interactions for Protein: Q9H4D5

NXF3, Nuclear RNA export factor 3, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NXF3Q9H4D5 SNORA20.1-201ENST00000364790 130 ntBASIC0.5□□□□□ -2.33
NXF3Q9H4D5 Y_RNA.454-201ENST00000384224 113 ntBASIC0.5□□□□□ -2.33
NXF3Q9H4D5 RNU6-463P-201ENST00000384340 107 ntBASIC0.5□□□□□ -2.33
NXF3Q9H4D5 RNU4-70P-201ENST00000384579 139 ntBASIC0.5□□□□□ -2.33
NXF3Q9H4D5 MIR563-201ENST00000385080 79 ntBASIC0.5□□□□□ -2.33
NXF3Q9H4D5 RNA5SP261-201ENST00000410536 106 ntBASIC0.5□□□□□ -2.33
NXF3Q9H4D5 AC114737.2-201ENST00000421583 173 ntBASIC0.5□□□□□ -2.33
NXF3Q9H4D5 RNU4-54P-201ENST00000516428 129 ntBASIC0.5□□□□□ -2.33
NXF3Q9H4D5 AC011195.1-201ENST00000578177 177 ntBASIC0.5□□□□□ -2.33
NXF3Q9H4D5 MIR3149-201ENST00000584629 83 ntBASIC0.5□□□□□ -2.33
NXF3Q9H4D5 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.5□□□□□ -2.33
NXF3Q9H4D5 MIR6717-201ENST00000622747 73 ntBASIC0.5□□□□□ -2.33
NXF3Q9H4D5 Y_RNA.182-201ENST00000363880 111 ntBASIC0.49□□□□□ -2.33
NXF3Q9H4D5 RNU6-643P-201ENST00000384018 107 ntBASIC0.49□□□□□ -2.33
NXF3Q9H4D5 Y_RNA.430-201ENST00000384081 110 ntBASIC0.49□□□□□ -2.33
NXF3Q9H4D5 MIR588-201ENST00000384900 83 ntBASIC0.49□□□□□ -2.33
NXF3Q9H4D5 MIR624-201ENST00000385217 97 ntBASIC0.49□□□□□ -2.33
NXF3Q9H4D5 RNU1-119P-201ENST00000391122 165 ntBASIC0.49□□□□□ -2.33
NXF3Q9H4D5 AL078595.1-201ENST00000404458 226 ntBASIC0.49□□□□□ -2.33
NXF3Q9H4D5 RNU6-1165P-201ENST00000410119 107 ntBASIC0.49□□□□□ -2.33
NXF3Q9H4D5 AC244098.3-201ENST00000424803 96 ntBASIC0.49□□□□□ -2.33
NXF3Q9H4D5 RNU6-977P-201ENST00000516411 103 ntBASIC0.49□□□□□ -2.33
NXF3Q9H4D5 AC018659.1-201ENST00000551083 169 ntBASIC0.49□□□□□ -2.33
NXF3Q9H4D5 AC091932.4-201ENST00000623386 200 ntBASIC0.49□□□□□ -2.33
NXF3Q9H4D5 MTND5P32-201ENST00000560711 1802 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 AL596211.1-201ENST00000569873 2277 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 Y_RNA.75-201ENST00000362927 97 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 RNU6-275P-201ENST00000364910 107 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 RNU6-47P-201ENST00000383866 107 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 Y_RNA.435-201ENST00000384095 112 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 MIR520H-201ENST00000385126 88 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 RNU6-1319P-201ENST00000390855 104 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 RNU6-747P-201ENST00000390928 104 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 RNU6-241P-201ENST00000391148 104 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 RNU6-918P-201ENST00000391219 106 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 RNA5SP127-201ENST00000411051 133 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 RNU6-177P-201ENST00000411257 104 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 MIR4804-201ENST00000581683 73 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 MIR4676-201ENST00000583078 72 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 Z83818.1-201ENST00000603584 150 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 MIR5087-201ENST00000635826 76 ntBASIC0.48□□□□□ -2.33
NXF3Q9H4D5 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
NXF3Q9H4D5 Y_RNA.412-201ENST00000384001 104 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 RNU6-1237P-201ENST00000384777 107 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 MIR520F-201ENST00000384824 87 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 MIR573-201ENST00000384964 99 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 MT-TF-201ENST00000387314 71 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.47□□□□□ -2.33
NXF3Q9H4D5 RNU7-56P-201ENST00000458744 62 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.47□□□□□ -2.33
NXF3Q9H4D5 SCARNA15-202ENST00000516881 127 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 AC022559.1-201ENST00000520905 205 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 MRPS18CP4-201ENST00000535821 231 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 MIR3152-201ENST00000579801 74 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 AL162730.1-201ENST00000605734 292 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 U6.106-201ENST00000636360 105 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 AC010487.4-201ENST00000637027 61 ntBASIC0.47□□□□□ -2.33
NXF3Q9H4D5 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
NXF3Q9H4D5 Y_RNA.144-201ENST00000363521 113 ntBASIC0.46□□□□□ -2.34
NXF3Q9H4D5 Y_RNA.200-201ENST00000364018 102 ntBASIC0.46□□□□□ -2.34
NXF3Q9H4D5 RNU4-16P-201ENST00000364737 141 ntBASIC0.46□□□□□ -2.34
NXF3Q9H4D5 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
NXF3Q9H4D5 RNA5SP222-201ENST00000411039 105 ntBASIC0.46□□□□□ -2.34
NXF3Q9H4D5 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.46□□□□□ -2.34
NXF3Q9H4D5 AC008608.1-201ENST00000603910 127 ntBASIC0.46□□□□□ -2.34
NXF3Q9H4D5 AC009779.6-201ENST00000603972 165 ntBASIC0.46□□□□□ -2.34
NXF3Q9H4D5 AC243829.6-201ENST00000612652 106 ntBASIC0.46□□□□□ -2.34
NXF3Q9H4D5 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.46□□□□□ -2.34
NXF3Q9H4D5 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.46□□□□□ -2.34
NXF3Q9H4D5 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
NXF3Q9H4D5 MIR411-201ENST00000362239 96 ntBASIC0.45□□□□□ -2.34
NXF3Q9H4D5 MIR30D-201ENST00000362283 70 ntBASIC0.45□□□□□ -2.34
NXF3Q9H4D5 Y_RNA.83-201ENST00000363005 113 ntBASIC0.45□□□□□ -2.34
NXF3Q9H4D5 SNORA25.7-201ENST00000364375 127 ntBASIC0.45□□□□□ -2.34
NXF3Q9H4D5 MIR938-201ENST00000401216 83 ntBASIC0.45□□□□□ -2.34
NXF3Q9H4D5 RNU7-185P-201ENST00000459215 60 ntBASIC0.45□□□□□ -2.34
NXF3Q9H4D5 RNU7-70P-201ENST00000516941 66 ntBASIC0.45□□□□□ -2.34
NXF3Q9H4D5 MIR4431-201ENST00000579990 94 ntBASIC0.45□□□□□ -2.34
NXF3Q9H4D5 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.45□□□□□ -2.34
NXF3Q9H4D5 MIR6841-201ENST00000637129 72 ntBASIC0.45□□□□□ -2.34
NXF3Q9H4D5 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.45□□□□□ -2.34
NXF3Q9H4D5 Y_RNA.205-201ENST00000364128 113 ntBASIC0.44□□□□□ -2.34
NXF3Q9H4D5 SNORA36.2-201ENST00000384004 127 ntBASIC0.44□□□□□ -2.34
NXF3Q9H4D5 MIR125B2-201ENST00000385128 89 ntBASIC0.44□□□□□ -2.34
NXF3Q9H4D5 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.44□□□□□ -2.34
NXF3Q9H4D5 RNU6-1149P-201ENST00000516810 97 ntBASIC0.44□□□□□ -2.34
NXF3Q9H4D5 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.44□□□□□ -2.34
NXF3Q9H4D5 AC021613.1-201ENST00000623880 111 ntBASIC0.44□□□□□ -2.34
NXF3Q9H4D5 RNU6-1020P-201ENST00000363684 107 ntBASIC0.43□□□□□ -2.34
NXF3Q9H4D5 RNU6-312P-201ENST00000364629 107 ntBASIC0.43□□□□□ -2.34
NXF3Q9H4D5 VTRNA1-3-201ENST00000365645 89 ntBASIC0.43□□□□□ -2.34
NXF3Q9H4D5 Y_RNA.489-201ENST00000384410 101 ntBASIC0.43□□□□□ -2.34
NXF3Q9H4D5 SNORA20-201ENST00000384662 132 ntBASIC0.43□□□□□ -2.34
NXF3Q9H4D5 MIR193B-201ENST00000384907 83 ntBASIC0.43□□□□□ -2.34
NXF3Q9H4D5 MIR1257-201ENST00000408490 117 ntBASIC0.43□□□□□ -2.34
NXF3Q9H4D5 RNU6-1219P-201ENST00000516143 112 ntBASIC0.43□□□□□ -2.34
NXF3Q9H4D5 AC130289.1-201ENST00000577321 73 ntBASIC0.43□□□□□ -2.34
NXF3Q9H4D5 SNORD92-201ENST00000585078 85 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms