Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MIR1-1-201ENST00000362147 71 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-886P-201ENST00000384319 105 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.555-201ENST00000384673 110 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 RNU7-45P-201ENST00000459460 63 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 AC074198.2-201ENST00000508153 258 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 MIR6740-201ENST00000618268 113 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 MIR3658-201ENST00000636291 56 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-349P-201ENST00000362402 107 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-934P-201ENST00000365154 107 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-449P-201ENST00000383914 107 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 MIR588-201ENST00000384900 83 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 MT-TF-201ENST00000387314 71 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.584-201ENST00000391090 114 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 PCNPP3-201ENST00000393579 471 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 RPS26P5-201ENST00000418544 335 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-113P-201ENST00000516653 101 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 SNORA22.1-201ENST00000362701 134 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.120-201ENST00000363304 110 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 SNORD18B-201ENST00000365659 72 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 SNORD12C-201ENST00000386307 89 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-1165P-201ENST00000410119 107 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 AC112693.2-201ENST00000556538 232 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 MIR3973-201ENST00000579824 107 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.778-201ENST00000620203 90 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.251-201ENST00000364551 99 ntBASIC0.68□□□□□ -2.3
CCDC28BQ9BUN5 SNORA25.9-201ENST00000365087 128 ntBASIC0.68□□□□□ -2.3
CCDC28BQ9BUN5 SNORD89-201ENST00000390981 114 ntBASIC0.68□□□□□ -2.3
CCDC28BQ9BUN5 AC113410.1-201ENST00000505029 247 ntBASIC0.68□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-369P-201ENST00000362515 102 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.150-201ENST00000363562 102 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 AL603914.1-201ENST00000401964 204 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 RNA5SP144-201ENST00000410846 116 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 RNU2-60P-201ENST00000517290 128 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 MIR3144-201ENST00000579460 79 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 AC010332.2-201ENST00000613083 1904 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 MIR30D-201ENST00000362283 70 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.180-201ENST00000363867 113 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-151P-201ENST00000364158 107 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 RNU4-11P-201ENST00000365287 132 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.464-201ENST00000384282 110 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 MIR608-201ENST00000384820 100 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 RNA5SP237-201ENST00000410414 113 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 SNORD83.1-201ENST00000411362 77 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 snoU13.21-201ENST00000459368 105 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 MIR4771-2-201ENST00000577758 74 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.757-201ENST00000578934 114 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 MIR3668-201ENST00000582138 75 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 MIR4771-1-201ENST00000582617 74 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 AC104465.1-201ENST00000611365 139 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 uc_338.6-201ENST00000613544 171 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 AL662814.1-201ENST00000617364 121 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 RNU4-16P-201ENST00000364737 141 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-690P-201ENST00000365242 106 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-1130P-201ENST00000365434 107 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 SNORD116-18-201ENST00000383961 92 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 SNORD105-201ENST00000386910 85 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 MIR513C-201ENST00000401352 84 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 AL022718.1-201ENST00000412004 84 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 AC004941.2-201ENST00000427009 228 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 RNU7-197P-201ENST00000458836 62 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-977P-201ENST00000516411 103 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 AL353765.1-201ENST00000605514 183 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 MIR8070-201ENST00000616510 88 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 SNORD115-2-201ENST00000362842 82 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 SNORD115-20-201ENST00000365099 82 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 MIR499A-201ENST00000384903 122 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-733P-201ENST00000410759 104 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-1086P-201ENST00000410930 100 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 Y_RNA.690-201ENST00000516603 95 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-1212P-201ENST00000517023 104 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 MIR4804-201ENST00000581683 73 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 MIR4676-201ENST00000583078 72 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 MIR4305-201ENST00000583252 102 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 SNORA4-201ENST00000584302 138 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 RMST_2.1-201ENST00000617263 136 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 Y_RNA.400-201ENST00000383963 111 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-804P-201ENST00000384286 107 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 MIR938-201ENST00000401216 83 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 MIR1257-201ENST00000408490 117 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 RNU7-185P-201ENST00000459215 60 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 RNU7-113P-201ENST00000459273 62 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 RNA5SP102-201ENST00000516865 106 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 AC133485.4-201ENST00000561835 220 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 AC138907.4-201ENST00000570107 226 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 MIR548X2-201ENST00000579776 100 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 AC023934.1-201ENST00000574529 2389 ntBASIC0.62□□□□□ -2.31
CCDC28BQ9BUN5 MIR373-201ENST00000362273 69 ntBASIC0.62□□□□□ -2.31
CCDC28BQ9BUN5 RNY1P11-201ENST00000363759 113 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 255.7 ms