Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MIR1-1-201ENST00000362147 71 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-886P-201ENST00000384319 105 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.555-201ENST00000384673 110 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 RNU7-45P-201ENST00000459460 63 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 AC074198.2-201ENST00000508153 258 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 MIR6740-201ENST00000618268 113 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 MIR3658-201ENST00000636291 56 ntBASIC0.71□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-349P-201ENST00000362402 107 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-934P-201ENST00000365154 107 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-449P-201ENST00000383914 107 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 MIR588-201ENST00000384900 83 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 MT-TF-201ENST00000387314 71 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.584-201ENST00000391090 114 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 PCNPP3-201ENST00000393579 471 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 RPS26P5-201ENST00000418544 335 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-113P-201ENST00000516653 101 ntBASIC0.7□□□□□ -2.3
CCDC28BQ9BUN5 SNORA22.1-201ENST00000362701 134 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.120-201ENST00000363304 110 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 SNORD18B-201ENST00000365659 72 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 SNORD12C-201ENST00000386307 89 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-1165P-201ENST00000410119 107 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 AC112693.2-201ENST00000556538 232 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 MIR3973-201ENST00000579824 107 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.778-201ENST00000620203 90 ntBASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.69□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.251-201ENST00000364551 99 ntBASIC0.68□□□□□ -2.3
CCDC28BQ9BUN5 SNORA25.9-201ENST00000365087 128 ntBASIC0.68□□□□□ -2.3
CCDC28BQ9BUN5 SNORD89-201ENST00000390981 114 ntBASIC0.68□□□□□ -2.3
CCDC28BQ9BUN5 AC113410.1-201ENST00000505029 247 ntBASIC0.68□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-369P-201ENST00000362515 102 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.150-201ENST00000363562 102 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 AL603914.1-201ENST00000401964 204 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 RNA5SP144-201ENST00000410846 116 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 RNU2-60P-201ENST00000517290 128 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 MIR3144-201ENST00000579460 79 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.67□□□□□ -2.3
CCDC28BQ9BUN5 AC010332.2-201ENST00000613083 1904 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 MIR30D-201ENST00000362283 70 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.180-201ENST00000363867 113 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 RNU6-151P-201ENST00000364158 107 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 RNU4-11P-201ENST00000365287 132 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.464-201ENST00000384282 110 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 MIR608-201ENST00000384820 100 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 RNA5SP237-201ENST00000410414 113 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 SNORD83.1-201ENST00000411362 77 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 snoU13.21-201ENST00000459368 105 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 MIR4771-2-201ENST00000577758 74 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 Y_RNA.757-201ENST00000578934 114 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 MIR3668-201ENST00000582138 75 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 MIR4771-1-201ENST00000582617 74 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 AC104465.1-201ENST00000611365 139 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 uc_338.6-201ENST00000613544 171 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 AL662814.1-201ENST00000617364 121 ntBASIC0.66□□□□□ -2.3
CCDC28BQ9BUN5 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 RNU4-16P-201ENST00000364737 141 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-690P-201ENST00000365242 106 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-1130P-201ENST00000365434 107 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 SNORD116-18-201ENST00000383961 92 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 SNORD105-201ENST00000386910 85 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 MIR513C-201ENST00000401352 84 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 AL022718.1-201ENST00000412004 84 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 AC004941.2-201ENST00000427009 228 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 RNU7-197P-201ENST00000458836 62 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-977P-201ENST00000516411 103 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 AL353765.1-201ENST00000605514 183 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 MIR8070-201ENST00000616510 88 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.65□□□□□ -2.31
CCDC28BQ9BUN5 SNORD115-2-201ENST00000362842 82 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 SNORD115-20-201ENST00000365099 82 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 MIR499A-201ENST00000384903 122 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-733P-201ENST00000410759 104 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-1086P-201ENST00000410930 100 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 Y_RNA.690-201ENST00000516603 95 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-1212P-201ENST00000517023 104 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 MIR4804-201ENST00000581683 73 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 MIR4676-201ENST00000583078 72 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 MIR4305-201ENST00000583252 102 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 SNORA4-201ENST00000584302 138 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 RMST_2.1-201ENST00000617263 136 ntBASIC0.64□□□□□ -2.31
CCDC28BQ9BUN5 Y_RNA.400-201ENST00000383963 111 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 RNU6-804P-201ENST00000384286 107 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 MIR938-201ENST00000401216 83 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 MIR1257-201ENST00000408490 117 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 RNU7-185P-201ENST00000459215 60 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 RNU7-113P-201ENST00000459273 62 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 RNA5SP102-201ENST00000516865 106 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 AC133485.4-201ENST00000561835 220 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 AC138907.4-201ENST00000570107 226 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 MIR548X2-201ENST00000579776 100 ntBASIC0.63□□□□□ -2.31
CCDC28BQ9BUN5 AC023934.1-201ENST00000574529 2389 ntBASIC0.62□□□□□ -2.31
CCDC28BQ9BUN5 MIR373-201ENST00000362273 69 ntBASIC0.62□□□□□ -2.31
CCDC28BQ9BUN5 RNY1P11-201ENST00000363759 113 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms