| BEGAIN | Q9BUH8 | RNU7-137P-201 | ENST00000516788 | 62 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | MIR4635-201 | ENST00000583759 | 79 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | RNU6-86P-201 | ENST00000606534 | 107 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | TDRD15-201 | ENST00000405799 | 6135 nt | APPRIS P1 TSL 2 BASIC | 2.93 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | RNU6-1163P-201 | ENST00000364516 | 107 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | TRAJ36-201 | ENST00000614481 | 58 nt | APPRIS P1 BASIC | 2.92 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | MIR3202-2-201 | ENST00000635980 | 79 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | FSIP2-206 | ENST00000611759 | 3882 nt | APPRIS ALT2 TSL 5 BASIC | 2.92 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | DNAH14-210 | ENST00000439375 | 13548 nt | APPRIS P1 TSL 5 BASIC | 2.92 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | RNA5SP259-201 | ENST00000365541 | 109 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | SNORD38.2-201 | ENST00000384470 | 69 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | RNA5SP212-201 | ENST00000391223 | 107 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | AL359511.1-201 | ENST00000402970 | 211 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | RNU7-41P-201 | ENST00000515917 | 61 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | AC025887.1-201 | ENST00000578349 | 264 nt | TSL 3 BASIC | 2.91 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | AC022596.1-201 | ENST00000582895 | 302 nt | TSL 5 BASIC | 2.91 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | AC103810.7-201 | ENST00000607821 | 91 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | FGF7-201 | ENST00000267843 | 5467 nt | APPRIS P1 TSL 1 (best) BASIC | 2.91 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | AKAP9-203 | ENST00000359028 | 12247 nt | APPRIS ALT2 TSL 5 BASIC | 2.91 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | OR51A4-202 | ENST00000641898 | 4393 nt | APPRIS P1 BASIC | 2.91 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | TAB2-205 | ENST00000538427 | 4240 nt | APPRIS P1 TSL 5 BASIC | 2.9 | □□□□□ -1.94 | | |
| BEGAIN | Q9BUH8 | Y_RNA.98-201 | ENST00000363109 | 102 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU6-1276P-201 | ENST00000365372 | 104 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | MIR513A1-201 | ENST00000385138 | 129 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU6-1321P-201 | ENST00000390905 | 107 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | SNORD88.1-201 | ENST00000408684 | 91 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | JTBP1-201 | ENST00000441314 | 247 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | AC055731.1-201 | ENST00000474387 | 401 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | AL035078.1-202 | ENST00000531627 | 413 nt | TSL 2 BASIC | 2.9 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | AC245884.12-201 | ENST00000615364 | 59 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | Metazoa_SRP.32-201 | ENST00000622685 | 286 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | MIR6733-201 | ENST00000635723 | 61 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | TAB2-201 | ENST00000367456 | 4553 nt | APPRIS P1 TSL 5 BASIC | 2.9 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNA5SP48-201 | ENST00000363969 | 126 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU6-1237P-201 | ENST00000384777 | 107 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | MIR548G-201 | ENST00000408442 | 89 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNA5SP237-201 | ENST00000410414 | 113 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | AL161935.2-201 | ENST00000414627 | 60 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU7-48P-201 | ENST00000458875 | 63 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | AC008781.2-201 | ENST00000502205 | 2480 nt | TSL 1 (best) BASIC | 2.89 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU6-295P-201 | ENST00000516901 | 104 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | MIR4446-201 | ENST00000578505 | 67 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU6-90P-201 | ENST00000606352 | 106 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | AC105081.1-201 | ENST00000617727 | 106 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | BRCA1-202 | ENST00000354071 | 4497 nt | TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | FAM46D-201 | ENST00000308293 | 3011 nt | APPRIS P1 TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | Y_RNA.73-201 | ENST00000362910 | 113 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU6-497P-201 | ENST00000365316 | 104 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | SNORA64-201 | ENST00000384674 | 134 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | MIR499A-201 | ENST00000384903 | 122 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | MIR518E-201 | ENST00000385252 | 88 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | AC019129.1-201 | ENST00000403786 | 261 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | MIR4668-201 | ENST00000582284 | 70 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | MIR3605-201 | ENST00000583214 | 100 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | LIFR-201 | ENST00000263409 | 10089 nt | APPRIS P1 TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU6-219P-201 | ENST00000364728 | 107 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU6-1124P-201 | ENST00000384169 | 107 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | Y_RNA.567-201 | ENST00000384736 | 106 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | MIR524-201 | ENST00000385242 | 87 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | AC009474.2-201 | ENST00000451383 | 136 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | SNORD111.1-201 | ENST00000516421 | 86 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNY1P13-201 | ENST00000365030 | 105 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | MIR489-201 | ENST00000384923 | 84 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | SNORD23.1-201 | ENST00000408212 | 104 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | Y_RNA.620-201 | ENST00000411009 | 88 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | COX7A2-206 | ENST00000472311 | 325 nt | TSL 2 BASIC | 2.86 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | MIR5588-201 | ENST00000581890 | 63 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | SACS-201 | ENST00000382292 | 15324 nt | APPRIS P1 TSL 5 BASIC | 2.86 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | APC-201 | ENST00000257430 | 10701 nt | APPRIS P1 TSL 5 BASIC | 2.85 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | Z82195.2-201 | ENST00000612348 | 18351 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU6-1244P-201 | ENST00000363614 | 108 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | SNORA26.9-201 | ENST00000391322 | 122 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | SPINT5P-201 | ENST00000448174 | 155 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU6-267P-201 | ENST00000516714 | 103 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | AC141846.1-201 | ENST00000568348 | 142 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | AL357312.1-201 | ENST00000603879 | 298 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | SEPT14P17-201 | ENST00000617978 | 177 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | FO624990.1-201 | ENST00000636373 | 85 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU6-228P-201 | ENST00000362700 | 106 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNU6-979P-201 | ENST00000383896 | 107 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | RNY1P4-201 | ENST00000384595 | 115 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | SUMO1P4-201 | ENST00000429430 | 302 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | SNORA9.3-201 | ENST00000516383 | 129 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | FAM13A-AS1_1.1-201 | ENST00000612555 | 119 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | AP001362.1-201 | ENST00000625165 | 124 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| BEGAIN | Q9BUH8 | FGF14-201 | ENST00000376131 | 12882 nt | TSL 1 (best) BASIC | 2.84 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | RNA5SP276-201 | ENST00000362580 | 94 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | RNU1-17P-201 | ENST00000363022 | 152 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | SNORD41-201 | ENST00000386967 | 70 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | AC133485.1-201 | ENST00000567176 | 124 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | DLEU2_6.1-201 | ENST00000610536 | 112 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | AL662814.1-201 | ENST00000617364 | 121 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | SCN7A-206 | ENST00000619410 | 7186 nt | APPRIS P1 TSL 5 BASIC | 2.83 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | SCN7A-207 | ENST00000621965 | 7186 nt | APPRIS P1 TSL 5 BASIC | 2.83 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | DYNC2H1-202 | ENST00000375735 | 13678 nt | APPRIS ALT1 TSL 1 (best) BASIC | 2.83 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | SNORA25.9-201 | ENST00000365087 | 128 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | RNA5SP138-201 | ENST00000365098 | 114 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | snoU13.18-201 | ENST00000459483 | 104 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | MTND5P40-201 | ENST00000559945 | 246 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| BEGAIN | Q9BUH8 | snoU13.31-201 | ENST00000607291 | 104 nt | BASIC | 2.82 | □□□□□ -1.96 | | |