Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.74□□□□□ -2.29
CCDC3Q9BQI4 RN7SL793P-201ENST00000583259 296 ntBASIC0.74□□□□□ -2.29
CCDC3Q9BQI4 Y_RNA.274-201ENST00000364714 101 ntBASIC0.73□□□□□ -2.29
CCDC3Q9BQI4 RNU6-934P-201ENST00000365154 107 ntBASIC0.73□□□□□ -2.29
CCDC3Q9BQI4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
CCDC3Q9BQI4 RNU6-110P-201ENST00000384508 104 ntBASIC0.73□□□□□ -2.29
CCDC3Q9BQI4 MIR508-201ENST00000384857 115 ntBASIC0.73□□□□□ -2.29
CCDC3Q9BQI4 MIR216A-201ENST00000385063 110 ntBASIC0.73□□□□□ -2.29
CCDC3Q9BQI4 RNU6-205P-201ENST00000390858 107 ntBASIC0.73□□□□□ -2.29
CCDC3Q9BQI4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.73□□□□□ -2.29
CCDC3Q9BQI4 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.73□□□□□ -2.29
CCDC3Q9BQI4 RNU6-893P-201ENST00000458841 100 ntBASIC0.73□□□□□ -2.29
CCDC3Q9BQI4 AC107027.2-201ENST00000512197 115 ntBASIC0.73□□□□□ -2.29
CCDC3Q9BQI4 MIR6841-201ENST00000637129 72 ntBASIC0.73□□□□□ -2.29
CCDC3Q9BQI4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.72□□□□□ -2.29
CCDC3Q9BQI4 Y_RNA.297-201ENST00000364950 91 ntBASIC0.72□□□□□ -2.29
CCDC3Q9BQI4 Y_RNA.337-201ENST00000365312 102 ntBASIC0.72□□□□□ -2.29
CCDC3Q9BQI4 MT-TF-201ENST00000387314 71 ntBASIC0.72□□□□□ -2.29
CCDC3Q9BQI4 HMGN1P33-201ENST00000432945 451 ntBASIC0.72□□□□□ -2.29
CCDC3Q9BQI4 RNU7-121P-201ENST00000516604 62 ntBASIC0.72□□□□□ -2.29
CCDC3Q9BQI4 MIR3646-201ENST00000578301 84 ntBASIC0.72□□□□□ -2.29
CCDC3Q9BQI4 MIR6740-201ENST00000618268 113 ntBASIC0.72□□□□□ -2.29
CCDC3Q9BQI4 Y_RNA.240-201ENST00000364469 95 ntBASIC0.71□□□□□ -2.3
CCDC3Q9BQI4 Y_RNA.785-201ENST00000384290 109 ntBASIC0.71□□□□□ -2.3
CCDC3Q9BQI4 RNY1P4-201ENST00000384595 115 ntBASIC0.71□□□□□ -2.3
CCDC3Q9BQI4 MIR588-201ENST00000384900 83 ntBASIC0.71□□□□□ -2.3
CCDC3Q9BQI4 MIR605-201ENST00000385078 83 ntBASIC0.71□□□□□ -2.3
CCDC3Q9BQI4 SNORD105-201ENST00000386910 85 ntBASIC0.71□□□□□ -2.3
CCDC3Q9BQI4 RNU6-1165P-201ENST00000410119 107 ntBASIC0.71□□□□□ -2.3
CCDC3Q9BQI4 RNU6-1190P-201ENST00000410811 104 ntBASIC0.71□□□□□ -2.3
CCDC3Q9BQI4 RNU7-120P-201ENST00000459334 63 ntBASIC0.71□□□□□ -2.3
CCDC3Q9BQI4 RNU7-70P-201ENST00000516941 66 ntBASIC0.71□□□□□ -2.3
CCDC3Q9BQI4 HSBP1P2-201ENST00000299671 229 ntBASIC0.7□□□□□ -2.3
CCDC3Q9BQI4 Y_RNA.521-201ENST00000384560 114 ntBASIC0.7□□□□□ -2.3
CCDC3Q9BQI4 RNU6-239P-201ENST00000390990 99 ntBASIC0.7□□□□□ -2.3
CCDC3Q9BQI4 SEPT7P4-201ENST00000437076 306 ntBASIC0.7□□□□□ -2.3
CCDC3Q9BQI4 RNU6-1219P-201ENST00000516143 112 ntBASIC0.7□□□□□ -2.3
CCDC3Q9BQI4 RNU6-1149P-201ENST00000516810 97 ntBASIC0.7□□□□□ -2.3
CCDC3Q9BQI4 MIR6513-201ENST00000621188 64 ntBASIC0.7□□□□□ -2.3
CCDC3Q9BQI4 AC021613.1-201ENST00000623880 111 ntBASIC0.7□□□□□ -2.3
CCDC3Q9BQI4 MIR342-201ENST00000362212 99 ntBASIC0.69□□□□□ -2.3
CCDC3Q9BQI4 Y_RNA.205-201ENST00000364128 113 ntBASIC0.69□□□□□ -2.3
CCDC3Q9BQI4 RNU6-1318P-201ENST00000365389 103 ntBASIC0.69□□□□□ -2.3
CCDC3Q9BQI4 RNU6-1335P-201ENST00000365426 107 ntBASIC0.69□□□□□ -2.3
CCDC3Q9BQI4 Y_RNA.441-201ENST00000384123 112 ntBASIC0.69□□□□□ -2.3
CCDC3Q9BQI4 SNORA20-201ENST00000384662 132 ntBASIC0.69□□□□□ -2.3
CCDC3Q9BQI4 SNORA75.5-201ENST00000391291 81 ntBASIC0.69□□□□□ -2.3
CCDC3Q9BQI4 Y_RNA.793-201ENST00000411222 111 ntBASIC0.69□□□□□ -2.3
CCDC3Q9BQI4 AL590095.2-201ENST00000604136 117 ntBASIC0.69□□□□□ -2.3
CCDC3Q9BQI4 AL596211.1-201ENST00000569873 2277 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 MIR30D-201ENST00000362283 70 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 Y_RNA.29-201ENST00000362570 113 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 RNU4-84P-201ENST00000364200 139 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 Y_RNA.257-201ENST00000364596 102 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 RNU6-768P-201ENST00000384683 107 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 RNU6-1135P-201ENST00000411083 103 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 snoU13.21-201ENST00000459368 105 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 RNA5SP236-201ENST00000516169 116 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 RNU6-388P-201ENST00000517012 105 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 RNU6-389P-201ENST00000517048 105 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 AP002392.1-201ENST00000537692 208 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 AC004812.1-201ENST00000540773 146 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 AC078938.1-201ENST00000620993 318 ntBASIC0.68□□□□□ -2.3
CCDC3Q9BQI4 RNA5SP325-201ENST00000363756 130 ntBASIC0.67□□□□□ -2.3
CCDC3Q9BQI4 Y_RNA.357-201ENST00000365487 109 ntBASIC0.67□□□□□ -2.3
CCDC3Q9BQI4 SNORD12C-201ENST00000386307 89 ntBASIC0.67□□□□□ -2.3
CCDC3Q9BQI4 SNORD99-201ENST00000408612 74 ntBASIC0.67□□□□□ -2.3
CCDC3Q9BQI4 AL606490.4-201ENST00000423117 127 ntBASIC0.67□□□□□ -2.3
CCDC3Q9BQI4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC3Q9BQI4 RNU6-138P-201ENST00000515952 107 ntBASIC0.67□□□□□ -2.3
CCDC3Q9BQI4 MIR4804-201ENST00000581683 73 ntBASIC0.67□□□□□ -2.3
CCDC3Q9BQI4 MIR4676-201ENST00000583078 72 ntBASIC0.67□□□□□ -2.3
CCDC3Q9BQI4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.67□□□□□ -2.3
CCDC3Q9BQI4 AC011603.4-201ENST00000611325 277 ntBASIC0.67□□□□□ -2.3
CCDC3Q9BQI4 AC104465.1-201ENST00000611365 139 ntBASIC0.67□□□□□ -2.3
CCDC3Q9BQI4 MTND5P32-201ENST00000560711 1802 ntBASIC0.66□□□□□ -2.3
CCDC3Q9BQI4 RNU4-45P-201ENST00000365469 141 ntBASIC0.66□□□□□ -2.3
CCDC3Q9BQI4 SNORD83.1-201ENST00000411362 77 ntBASIC0.66□□□□□ -2.3
CCDC3Q9BQI4 AC244098.3-201ENST00000424803 96 ntBASIC0.66□□□□□ -2.3
CCDC3Q9BQI4 RNU7-56P-201ENST00000458744 62 ntBASIC0.66□□□□□ -2.3
CCDC3Q9BQI4 RNU7-45P-201ENST00000459460 63 ntBASIC0.66□□□□□ -2.3
CCDC3Q9BQI4 MIR4771-2-201ENST00000577758 74 ntBASIC0.66□□□□□ -2.3
CCDC3Q9BQI4 MIR4771-1-201ENST00000582617 74 ntBASIC0.66□□□□□ -2.3
CCDC3Q9BQI4 uc_338.6-201ENST00000613544 171 ntBASIC0.66□□□□□ -2.3
CCDC3Q9BQI4 SNORA22.1-201ENST00000362701 134 ntBASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 Y_RNA.52-201ENST00000362760 96 ntBASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 RNY1P6-201ENST00000384193 109 ntBASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 MIR125B2-201ENST00000385128 89 ntBASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 RNU1-119P-201ENST00000391122 165 ntBASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 MIR938-201ENST00000401216 83 ntBASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 MIR936-201ENST00000401264 98 ntBASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 MTND5P15-201ENST00000434246 349 ntBASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 RNU6-977P-201ENST00000516411 103 ntBASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 AC020891.4-201ENST00000605745 93 ntBASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 AL662814.1-201ENST00000617364 121 ntBASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 AC010332.2-201ENST00000613083 1904 ntBASIC0.65□□□□□ -2.31
CCDC3Q9BQI4 AC023934.1-201ENST00000574529 2389 ntBASIC0.64□□□□□ -2.31
CCDC3Q9BQI4 RNU6-349P-201ENST00000362402 107 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 299.1 ms