Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNU7-96P-201ENST00000459535 64 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-1149P-201ENST00000516810 97 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-958P-201ENST00000516995 106 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 AC036111.3-201ENST00000526389 112 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 AC131055.1-201ENST00000584626 316 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 AC091932.4-201ENST00000623386 200 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-508P-201ENST00000363231 103 ntBASIC0.64□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.272-201ENST00000364696 102 ntBASIC0.64□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-580P-201ENST00000365159 107 ntBASIC0.64□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.497-201ENST00000384447 98 ntBASIC0.64□□□□□ -2.31
ZNF540Q8NDQ6 SNORA79-201ENST00000408376 140 ntBASIC0.64□□□□□ -2.31
ZNF540Q8NDQ6 AL035398.1-201ENST00000430869 322 ntBASIC0.64□□□□□ -2.31
ZNF540Q8NDQ6 RNU2-11P-201ENST00000459191 187 ntBASIC0.64□□□□□ -2.31
ZNF540Q8NDQ6 snoU13.21-201ENST00000459368 105 ntBASIC0.64□□□□□ -2.31
ZNF540Q8NDQ6 AC107027.2-201ENST00000512197 115 ntBASIC0.64□□□□□ -2.31
ZNF540Q8NDQ6 RNA5SP480-201ENST00000516840 109 ntBASIC0.64□□□□□ -2.31
ZNF540Q8NDQ6 MIR6841-201ENST00000637129 72 ntBASIC0.64□□□□□ -2.31
ZNF540Q8NDQ6 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.330-201ENST00000365230 109 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-804P-201ENST00000384286 107 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 MT-TR-201ENST00000387439 65 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 MIR548I3-201ENST00000408378 149 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 MIR548I1-201ENST00000408810 149 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-588P-201ENST00000410281 105 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-602P-201ENST00000411155 105 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 RNU7-67P-201ENST00000459003 62 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.662-201ENST00000516028 97 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 RNU11-2P-201ENST00000516898 142 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 MTND5P41-201ENST00000517498 206 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 MIR6740-201ENST00000618268 113 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 PVT1_3.1-201ENST00000620853 95 ntBASIC0.63□□□□□ -2.31
ZNF540Q8NDQ6 MIR377-201ENST00000362145 69 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 SNORA25.7-201ENST00000364375 127 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.540-201ENST00000384638 111 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.555-201ENST00000384673 110 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.580-201ENST00000391004 95 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.651-201ENST00000459380 103 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-1110P-201ENST00000516462 101 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-1258P-201ENST00000516911 111 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 AC018659.1-201ENST00000551083 169 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 AC023827.1-201ENST00000569247 97 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-94P-201ENST00000607728 107 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 AC098479.1-201ENST00000609225 154 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 MIR6717-201ENST00000622747 73 ntBASIC0.62□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-349P-201ENST00000362402 107 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.168-201ENST00000363740 102 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.337-201ENST00000365312 102 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-1335P-201ENST00000365426 107 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.351-201ENST00000365436 96 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.398-201ENST00000383952 99 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 MIR563-201ENST00000385080 79 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 MT-TN-201ENST00000387400 73 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-205P-201ENST00000390858 107 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 SNORA75.5-201ENST00000391291 81 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 RNU4-54P-201ENST00000516428 129 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 MIR2115-201ENST00000516657 100 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 RNU7-53P-201ENST00000516705 60 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-255P-201ENST00000516957 105 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-182P-201ENST00000516970 105 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 MIR3144-201ENST00000579460 79 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 DNAJC19P2-201ENST00000593340 302 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 MIR6513-201ENST00000621188 64 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 AC021753.1-201ENST00000635724 168 ntBASIC0.61□□□□□ -2.31
ZNF540Q8NDQ6 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.180-201ENST00000363867 113 ntBASIC0.6□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.521-201ENST00000384560 114 ntBASIC0.6□□□□□ -2.31
ZNF540Q8NDQ6 MIR508-201ENST00000384857 115 ntBASIC0.6□□□□□ -2.31
ZNF540Q8NDQ6 MIR216A-201ENST00000385063 110 ntBASIC0.6□□□□□ -2.31
ZNF540Q8NDQ6 SNORD89-201ENST00000390981 114 ntBASIC0.6□□□□□ -2.31
ZNF540Q8NDQ6 AC107297.1-201ENST00000459991 176 ntBASIC0.6□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.686-201ENST00000516548 134 ntBASIC0.6□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-1212P-201ENST00000517023 104 ntBASIC0.6□□□□□ -2.31
ZNF540Q8NDQ6 MIR3646-201ENST00000578301 84 ntBASIC0.6□□□□□ -2.31
ZNF540Q8NDQ6 MIR4714-201ENST00000580728 77 ntBASIC0.6□□□□□ -2.31
ZNF540Q8NDQ6 AL596211.1-201ENST00000569873 2277 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 MIR342-201ENST00000362212 99 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.170-201ENST00000363746 110 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 SNORA1.1-201ENST00000364671 133 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 RNU4-11P-201ENST00000365287 132 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-396P-201ENST00000365369 105 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 SNORD116-18-201ENST00000383961 92 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.430-201ENST00000384081 110 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-1067P-201ENST00000384752 107 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 SNORD12C-201ENST00000386307 89 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-1319P-201ENST00000390855 104 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-747P-201ENST00000390928 104 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-241P-201ENST00000391148 104 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-177P-201ENST00000411257 104 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 AC015818.7-201ENST00000428754 109 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 AC087499.7-201ENST00000441958 109 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 RN7SL793P-201ENST00000583259 296 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.778-201ENST00000620203 90 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 AC021613.1-201ENST00000623880 111 ntBASIC0.59□□□□□ -2.31
ZNF540Q8NDQ6 MIR30D-201ENST00000362283 70 ntBASIC0.58□□□□□ -2.32
ZNF540Q8NDQ6 RNA5SP347-201ENST00000362445 119 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 172.1 ms