Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SNORD33.1-201ENST00000516213 88 ntBASIC1.22□□□□□ -2.21
CLIP4Q8N3C7 RN7SKP88-201ENST00000516847 250 ntBASIC1.22□□□□□ -2.21
CLIP4Q8N3C7 AC022523.2-201ENST00000561045 150 ntBASIC1.22□□□□□ -2.21
CLIP4Q8N3C7 7SK.8-201ENST00000612110 250 ntBASIC1.22□□□□□ -2.21
CLIP4Q8N3C7 7SK.11-201ENST00000615477 250 ntBASIC1.22□□□□□ -2.21
CLIP4Q8N3C7 7SK.13-201ENST00000622040 250 ntBASIC1.22□□□□□ -2.21
CLIP4Q8N3C7 SNORD38B-202ENST00000625943 69 ntBASIC1.22□□□□□ -2.21
CLIP4Q8N3C7 ZNF209P-201ENST00000593450 2304 ntBASIC1.22□□□□□ -2.21
CLIP4Q8N3C7 Y_RNA.198-201ENST00000364013 98 ntBASIC1.21□□□□□ -2.22
CLIP4Q8N3C7 MIR548A3-201ENST00000385297 97 ntBASIC1.21□□□□□ -2.22
CLIP4Q8N3C7 MIR759-201ENST00000390224 91 ntBASIC1.21□□□□□ -2.22
CLIP4Q8N3C7 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.21□□□□□ -2.22
CLIP4Q8N3C7 AC245047.7-201ENST00000440265 293 ntBASIC1.21□□□□□ -2.22
CLIP4Q8N3C7 Y_RNA.649-201ENST00000459077 103 ntBASIC1.21□□□□□ -2.22
CLIP4Q8N3C7 MTND5P34-201ENST00000568888 325 ntBASIC1.21□□□□□ -2.22
CLIP4Q8N3C7 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.21□□□□□ -2.22
CLIP4Q8N3C7 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 RNA5SP264-201ENST00000363115 107 ntBASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 Y_RNA.273-201ENST00000364703 102 ntBASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 Y_RNA.338-201ENST00000365320 114 ntBASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 MIR548A1-201ENST00000385041 97 ntBASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 MT-TI-201ENST00000387365 69 ntBASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 Y_RNA.629-201ENST00000411368 105 ntBASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 RNU1-123P-201ENST00000458950 160 ntBASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 AC113410.1-201ENST00000505029 247 ntBASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 AP003716.2-201ENST00000528260 108 ntBASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 AL670379.3-201ENST00000605040 251 ntBASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.2□□□□□ -2.22
CLIP4Q8N3C7 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 MIR103A2-201ENST00000362154 78 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 MIR378A-201ENST00000362177 66 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 RNU6-834P-201ENST00000362367 110 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 SNORD115-2-201ENST00000362842 82 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 Y_RNA.213-201ENST00000364178 111 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 SNORD115-20-201ENST00000365099 82 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 RNU6-396P-201ENST00000365369 105 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 RNU6-1056P-201ENST00000383996 107 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 Y_RNA.470-201ENST00000384307 117 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 SNORD12C-201ENST00000386307 89 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 MIR1185-1-201ENST00000408598 86 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 RNU4-62P-201ENST00000410125 130 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 RNU6-1064P-201ENST00000410626 104 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 RNU6-1054P-201ENST00000411293 104 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 AC244023.1-201ENST00000426884 112 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 AC048334.1-201ENST00000477975 159 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 RNA5SP33-201ENST00000516687 98 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 AC242498.1-201ENST00000604134 111 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 MIR8065-201ENST00000620577 100 ntBASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
CLIP4Q8N3C7 SNORD26-201ENST00000384147 75 ntBASIC1.18□□□□□ -2.22
CLIP4Q8N3C7 RNU6-1144P-201ENST00000384247 104 ntBASIC1.18□□□□□ -2.22
CLIP4Q8N3C7 RNU6-476P-201ENST00000384726 107 ntBASIC1.18□□□□□ -2.22
CLIP4Q8N3C7 AC004223.1-201ENST00000479840 271 ntBASIC1.18□□□□□ -2.22
CLIP4Q8N3C7 RNU1-92P-201ENST00000517017 135 ntBASIC1.18□□□□□ -2.22
CLIP4Q8N3C7 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.18□□□□□ -2.22
CLIP4Q8N3C7 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.17□□□□□ -2.22
CLIP4Q8N3C7 BTF3P4-201ENST00000418852 495 ntBASIC1.17□□□□□ -2.22
CLIP4Q8N3C7 RPS23P4-201ENST00000487908 423 ntBASIC1.17□□□□□ -2.22
CLIP4Q8N3C7 AC108729.3-201ENST00000513484 108 ntBASIC1.17□□□□□ -2.22
CLIP4Q8N3C7 SNORA31.2-201ENST00000516019 134 ntBASIC1.17□□□□□ -2.22
CLIP4Q8N3C7 MIR2115-201ENST00000516657 100 ntBASIC1.17□□□□□ -2.22
CLIP4Q8N3C7 RNU7-6P-201ENST00000516845 62 ntBASIC1.17□□□□□ -2.22
CLIP4Q8N3C7 RNU11-2P-201ENST00000516898 142 ntBASIC1.17□□□□□ -2.22
CLIP4Q8N3C7 MIR6129-201ENST00000616087 109 ntBASIC1.17□□□□□ -2.22
CLIP4Q8N3C7 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.17□□□□□ -2.22
CLIP4Q8N3C7 MIR6516-201ENST00000630554 81 ntBASIC1.17□□□□□ -2.22
CLIP4Q8N3C7 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.16□□□□□ -2.22
CLIP4Q8N3C7 RNY4P6-201ENST00000363667 96 ntBASIC1.16□□□□□ -2.22
CLIP4Q8N3C7 Y_RNA.299-201ENST00000364973 94 ntBASIC1.16□□□□□ -2.22
CLIP4Q8N3C7 RNU6-1237P-201ENST00000384777 107 ntBASIC1.16□□□□□ -2.22
CLIP4Q8N3C7 RNU4-69P-201ENST00000410677 143 ntBASIC1.16□□□□□ -2.22
CLIP4Q8N3C7 MIR3163-201ENST00000581592 73 ntBASIC1.16□□□□□ -2.22
CLIP4Q8N3C7 MIR548AE2-201ENST00000583456 67 ntBASIC1.16□□□□□ -2.22
CLIP4Q8N3C7 snoU13.31-201ENST00000607291 104 ntBASIC1.16□□□□□ -2.22
CLIP4Q8N3C7 RNU6-1325P-201ENST00000364905 105 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 SNORA32-201ENST00000384072 121 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 SNORA18-201ENST00000384416 132 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 SNORD116-21-201ENST00000384507 92 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 RNU6-342P-201ENST00000384521 104 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 SNORD20-201ENST00000384550 80 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 RNU6-429P-201ENST00000384582 108 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 SNORA40.6-201ENST00000391153 128 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 AC007012.1-201ENST00000567192 175 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 MIR4498-201ENST00000577599 66 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 MIR4421-201ENST00000578133 69 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 MIR3660-201ENST00000584845 100 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 AP000753.3-201ENST00000604083 169 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 AL512598.1-201ENST00000610158 273 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 AL391516.1-201ENST00000554380 2449 ntBASIC1.15□□□□□ -2.23
CLIP4Q8N3C7 RNA5SP327-201ENST00000362494 101 ntBASIC1.14□□□□□ -2.23
CLIP4Q8N3C7 RNU6-654P-201ENST00000364373 107 ntBASIC1.14□□□□□ -2.23
CLIP4Q8N3C7 RNU6-205P-201ENST00000390858 107 ntBASIC1.14□□□□□ -2.23
CLIP4Q8N3C7 AP1B1P2-201ENST00000416196 106 ntBASIC1.14□□□□□ -2.23
CLIP4Q8N3C7 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.14□□□□□ -2.23
CLIP4Q8N3C7 RNU7-95P-201ENST00000459222 64 ntBASIC1.14□□□□□ -2.23
CLIP4Q8N3C7 Y_RNA.35-201ENST00000362601 101 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms